Table 1.
Isolate ID | Accession Number a | Isolation date | Isolate Source | Host species | Origin | Antimicrobial Resistance Profile c | Clade |
---|---|---|---|---|---|---|---|
16584 b | SRR2534093 | 11/20/2013 | Feces | Swine | Nairobi, Kenya | SUT- CIP | B |
11582 b | SRR3027717 | 01/01/2005 | Carcass | Swine | Addis Ababa, Ethiopia | AMP-CIP | A |
11576 | SRR3027712 | 01/01/2005 | Chicken Carcass | Poultry | Addis Ababa, Ethiopia | AMP-STR-SUT-TET-GEN-CIP | A |
11577 | SRR3027719 | 01/01/2005 | Beef | Bovine | Addis Ababa, Ethiopia | AMP-STR-SUT-TET-GEN-CIP | A |
11578 | SRR3027706 | 01/01/2005 | Chicken Carcass | Poultry | Addis Ababa, Ethiopia | AMP-STR-SUT-TET-GEN-CIP | A |
11579 | SRR3027714 | 01/01/2005 | Cecal contents | Swine | Addis Ababa, Ethiopia | AMP-STR-SUT-TET- CIP | A |
11580 | SRR3027721 | 01/01/2005 | Cecal contents | Swine | Addis Ababa, Ethiopia | AMP-STR-SUT-TET-GEN-CIP | A |
11581 | SRR3027711 | 01/01/2005 | Mesenteric lymph nodes | Swine | Addis Ababa, Ethiopia | AMP-STR-SUT-TET-GEN-CIP | A |
11583 | SRR3027707 | 01/01/2005 | Mesenteric lymph nodes | Swine | Addis Ababa, Ethiopia | AMP-STR-SUT-TET-GEN-CIP | A |
11584 | SRR3027716 | 01/01/2005 | Liver | Swine | Addis Ababa, Ethiopia | STR-SUT-TET-GEN | A |
11589 | SRR3027715 | 01/01/2005 | Carcass | Swine | Addis Ababa, Ethiopia | STR-SUT-TET-GEN | D |
16846 | SRR3115978 | 12/27/2013 | Feces | Bovine | Addis Ababa, Ethiopia | AMP-STR-SUT-TET-GEN-CIP | C |
16845 | SRR3115968 | 12/27/2013 | Feces | Bovine | Addis Ababa, Ethiopia | AMP-STR-SUT-TET-GEN-CIP | C |
16847 | SRR3115987 | 12/27/2013 | Feces | Bovine | Addis Ababa, Ethiopia | AMP-STR-SUT-TET-GEN-CIP | C |
11586 | SRR3027710 | 01/01/2005 | Cecal contents | Swine | Addis Ababa, Ethiopia | STR-SUT-TET-GEN-CIP | A |
11585 | SRR3027723 | 01/01/2005 | Tongue | Swine | Addis Ababa, Ethiopia | SUT-TET-GEN-CIP | A |
11587 | SRR3027720 | 01/01/2005 | Liver | Swine | Addis Ababa, Ethiopia | STR-SUT-TET-GEN-CIP | A |
11588 | SRR3027708 | 01/01/2005 | Mesenteric lymph nodes | Swine | Addis Ababa, Ethiopia | STR-SUT-TET-GEN-KAN-CIP | C |
11590 | SRR3027722 | 01/01/2005 | Tongue | Swine | Addis Ababa, Ethiopia | STR-SUT-TET-GEN-CIP | C |
Accession number of sequences from GenBank;
Isolates with no multidrug resistance profile.
AMP, ampicillin (10 µg); CIP, ciprofloxacin (5 µg); GEN, gentamicin (10 µg); KAN, kanamycin (30 µg); STR, streptomycin (10 µg); SUT, sulfamethoxazole/trimethoprim (23.75/1.25 µg); TET, tetracycline (30 µg).