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. Author manuscript; available in PMC: 2022 Jul 4.
Published in final edited form as: Nat Protoc. 2022 Jan 12;17(2):421–444. doi: 10.1038/s41596-021-00648-5
Parameters
Ali_mRadius=[116,116,72] %% in Å, enclosing 7 hexamers
Ali_mCenter=[0,0,0] %% in Å
Ali_mType=sphere
Ali_samplingRate=4 %% binning factor for averaging
Raw_classes_odd=[0;1.*ones(2,1)] %% C1 symmetry for half map 1
Raw_classes_eve=[0;1.*ones(2,1)] %% C1 symmetry for half map 2
Cls_mRadius=[92,92,76] %% classification mask radius
Cls_mCenter=[0,0,0]
Cls_mType=sphere %% classification mask
Cls_samplingRate=4 %% binning factor for classification
flgClassify=1 %% classification flag