Table 2 |.
emClarity processing run time (5 tilt-series).
| emClarity processing steps | Binning | GPU card | # GPU units | Time |
|---|---|---|---|---|
|
| ||||
| ctf estimate | 1 | Tesla V100 | 1 | 25 m |
| template search | 8 | Tesla V100 | 1 | 1 h |
| init cycle 0–2 | 6 | Tesla V100 | 4 | 40 m |
| tomoCPR-1 cycle 3–5 | 5 | Tesla V100 | 4 | 2.5 h |
| tomoCPR-2 cycle 6–8 | 4 | Tesla V100 | 4 | 3 h |
| Classification | 4 | Tesla V100 | 4 | 40 m |
| cycle 9–10 | 4 | Tesla V100 | 4 | 1.5 h |
| tomoCPR-3 cycle 11–13 | 3 | Tesla V100 | 4 | 2 h |
| tomoCPR-4 cycle 14–16 | 2 | Tesla V100 | 4 | 3 h |
| tomoCPR-5 cycle 17–18 | 1 | Tesla V100 | 4 | 10 h |
| avg FinalAlignment | 1 | Tesla V100 | 4 | 1 h |
| cisTEM reconstruct/refine | 1 | Tesla V100 (cpu) | 12 cpu cores | 1.5 h |
Note: Each tomogram is divided into multiple sub-regions (one VLP/sub-region), which are processed in parallel.