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. Author manuscript; available in PMC: 2022 Jul 4.
Published in final edited form as: Nat Protoc. 2022 Jan 12;17(2):421–444. doi: 10.1038/s41596-021-00648-5
Parameters:
subTomoMeta=gag
PIXEL_SIZE=1.179e-10 %% pixel size in meters
Ali_mRadius=[116,116,72] %% in Å, enclosing 7 hexamers
Ali_mCenter=[0,0,0] %% in Å
particleMass= 1 %% in Megadalton
Ali_mType=sphere %% sphere, cylinder, rectangle
particleRadius=[66,66,56] %% corresponding to central hexamer size
Raw_className=0 % class0
FSC_bfactor=10 %% b-factor applied to half maps
Ali_samplingRate=6 %% binning factor
symmetry=C6 %% symmetry