Table 3.
Statistics for significant SNPs and proximal genes.
| Traits | SNP IDa | Chrb | Pos (bp) | Allelesc | MAFd | P-value | proximal genes |
|---|---|---|---|---|---|---|---|
| BWF | G21147253A | 3 | 21,147,253 | G/A | 0.10 | 3.84E-09 | CENPF |
| G16754641A | 5 | 16,754,641 | G/A | 0.11 | 5.74E-08 | 8kb Ud GAL | |
| G623515A | 6 | 623,515 | G/A | 0.16 | 9.30E-08 | — | |
| C3321921T | 9 | 3,321,921 | C/T | 0.29 | 3.42E-08 | GPC2 | |
| G3321930A | 9 | 3,321,930 | G/A | 0.30 | 4.24E-08 | GPC2 | |
| T4287370A | 14 | 4,287,370 | T/A | 0.13 | 4.84E-08 | 0.7kb U CYP3A4 | |
| C5246144G | 14 | 5,246,144 | C/G | 0.27 | 9.00E-08 | 18kb U PEMT | |
| G2854459T | 23 | 2,854,459 | G/T | 0.08 | 6.53E-08 | 30kb DeTMEM200B | |
| EN500 | T57212637A | 2 | 57,212,637 | T/A | 0.11 | 3.29E-08 | — |
| A57212781G | 2 | 57,212,781 | A/G | 0.11 | 6.55E-08 | — | |
| A57924869T | 2 | 57,924,869 | A/T | 0.12 | 3.50E-08 | DCDC2 | |
| A57925378C | 2 | 57,925,378 | A/C | 0.12 | 2.41E-08 | DCDC2 | |
| A57945258T | 2 | 57,945,258 | A/T | 0.06 | 5.61E-08 | NRSN1 | |
| C126998745A | 2 | 126,998,745 | C/A | 0.14 | 8.37E-08 | CPQ | |
| T126998774C | 2 | 126,998,774 | T/C | 0.14 | 5.19E-08 | CPQ | |
| C108380147G | 3 | 108,380,147 | C/G | 0.19 | 1.08E-08 | 62kb D TFAP2D | |
| EW | C137349071T | 1 | 137,349,071 | C/T | 0.15 | 1.63E-08 | SLC5A7 |
| T137349076C | 1 | 137,349,076 | T/C | 0.16 | 1.15E-08 | SLC5A7 | |
| T165331309C | 1 | 165,331,309 | T/C | 0.11 | 2.72E-08 | — | |
| C165333250A | 1 | 165,333,250 | C/A | 0.13 | 2.02E-08 | — | |
| A165336526C | 1 | 165,336,526 | A/C | 0.11 | 1.26E-08 | — | |
| T165366719C | 1 | 165,366,719 | T/C | 0.11 | 1.62E-08 | — | |
| T165434400A | 1 | 165,434,400 | T/A | 0.09 | 5.50E-08 | — | |
| A79958113G | 2 | 79,958,113 | A/G | 0.13 | 1.73E-08 | 8kb D UPP1 | |
| G82974373A | 2 | 82,974,373 | G/A | 0.09 | 1.78E-09 | — | |
| C83033381T | 2 | 83,033,381 | C/T | 0.09 | 1.13E-08 | 46kb U FHOD3 | |
| A128890264G | 2 | 128,890,264 | A/G | 0.14 | 7.55E-10 | 60kb DNCALD | |
| C17452066T | 3 | 17,452,066 | C/T | 0.38 | 4.24E-08 | ENAH | |
| T6405164C | 8 | 6,405,164 | T/C | 0.13 | 7.24E-08 | CEP350 | |
| C8498988T | 17 | 8,498,988 | C/T | 0.17 | 1.78E-08 | 69kb D RNF2 | |
| ESS | A5358928G | 13 | 5,358,928 | A/G | 0.27 | 7.99E-08 | SLIT3 |
| A5360528G | 13 | 5,360,528 | A/G | 0.30 | 8.18E-08 | SLIT3 | |
| T5362672G | 13 | 5,362,672 | T/G | 0.27 | 1.28E-08 | SLIT3 | |
| G5362697C | 13 | 5,362,697 | G/C | 0.28 | 6.16E-08 | SLIT3 | |
| EST | G89374390A | 3 | 89,374,390 | G/A | 0.47 | 2.81E-08 | — |
| C4415750T | 23 | 4,415,750 | C/T | 0.20 | 5.04E-08 | 2kb U PSMB2 | |
| HU | A17272906G | 13 | 17,272,906 | A/G | 0.35 | 5.09E-08 | 90kb D TTLL7 |
aAllele polymorphism and position on chromosome were used as SNP identity.
bThe positions are based on WASHUC2.
cThe first allele is minor allele.
dGene frequency of the minor allele.
eU, upstream of; D, downstream of.
BWF, body weight at first oviposition; EN500, the number of eggs produced in 500 days; EW, egg weight; EST, egg shell thickness; ESS, egg shell strength; HU, Haugh unit; MAF, minor allele frequencies.