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. 2022 Jun 20;9:877739. doi: 10.3389/fvets.2022.877739

Table 3.

Statistics for significant SNPs and proximal genes.

Traits SNP IDa Chrb Pos (bp) Allelesc MAFd P-value proximal genes
BWF G21147253A 3 21,147,253 G/A 0.10 3.84E-09 CENPF
G16754641A 5 16,754,641 G/A 0.11 5.74E-08 8kb Ud GAL
G623515A 6 623,515 G/A 0.16 9.30E-08
C3321921T 9 3,321,921 C/T 0.29 3.42E-08 GPC2
G3321930A 9 3,321,930 G/A 0.30 4.24E-08 GPC2
T4287370A 14 4,287,370 T/A 0.13 4.84E-08 0.7kb U CYP3A4
C5246144G 14 5,246,144 C/G 0.27 9.00E-08 18kb U PEMT
G2854459T 23 2,854,459 G/T 0.08 6.53E-08 30kb DeTMEM200B
EN500 T57212637A 2 57,212,637 T/A 0.11 3.29E-08
A57212781G 2 57,212,781 A/G 0.11 6.55E-08
A57924869T 2 57,924,869 A/T 0.12 3.50E-08 DCDC2
A57925378C 2 57,925,378 A/C 0.12 2.41E-08 DCDC2
A57945258T 2 57,945,258 A/T 0.06 5.61E-08 NRSN1
C126998745A 2 126,998,745 C/A 0.14 8.37E-08 CPQ
T126998774C 2 126,998,774 T/C 0.14 5.19E-08 CPQ
C108380147G 3 108,380,147 C/G 0.19 1.08E-08 62kb D TFAP2D
EW C137349071T 1 137,349,071 C/T 0.15 1.63E-08 SLC5A7
T137349076C 1 137,349,076 T/C 0.16 1.15E-08 SLC5A7
T165331309C 1 165,331,309 T/C 0.11 2.72E-08
C165333250A 1 165,333,250 C/A 0.13 2.02E-08
A165336526C 1 165,336,526 A/C 0.11 1.26E-08
T165366719C 1 165,366,719 T/C 0.11 1.62E-08
T165434400A 1 165,434,400 T/A 0.09 5.50E-08
A79958113G 2 79,958,113 A/G 0.13 1.73E-08 8kb D UPP1
G82974373A 2 82,974,373 G/A 0.09 1.78E-09
C83033381T 2 83,033,381 C/T 0.09 1.13E-08 46kb U FHOD3
A128890264G 2 128,890,264 A/G 0.14 7.55E-10 60kb DNCALD
C17452066T 3 17,452,066 C/T 0.38 4.24E-08 ENAH
T6405164C 8 6,405,164 T/C 0.13 7.24E-08 CEP350
C8498988T 17 8,498,988 C/T 0.17 1.78E-08 69kb D RNF2
ESS A5358928G 13 5,358,928 A/G 0.27 7.99E-08 SLIT3
A5360528G 13 5,360,528 A/G 0.30 8.18E-08 SLIT3
T5362672G 13 5,362,672 T/G 0.27 1.28E-08 SLIT3
G5362697C 13 5,362,697 G/C 0.28 6.16E-08 SLIT3
EST G89374390A 3 89,374,390 G/A 0.47 2.81E-08
C4415750T 23 4,415,750 C/T 0.20 5.04E-08 2kb U PSMB2
HU A17272906G 13 17,272,906 A/G 0.35 5.09E-08 90kb D TTLL7

aAllele polymorphism and position on chromosome were used as SNP identity.

bThe positions are based on WASHUC2.

cThe first allele is minor allele.

dGene frequency of the minor allele.

eU, upstream of; D, downstream of.

BWF, body weight at first oviposition; EN500, the number of eggs produced in 500 days; EW, egg weight; EST, egg shell thickness; ESS, egg shell strength; HU, Haugh unit; MAF, minor allele frequencies.