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(a) Comparison of FLR estimation searching PXD007058 (synthetic data set) using localization on different decoy amino acids: pAla, pGly, pLeu, pAsy, pGlu, and pPro (TPP, fully tryptic, 1 %FDR); (b–g) comparison of FLR estimation methods searching PXD007058 for each of the different decoy amino acids (TPP, fully tryptic, 1% FDR). X-axis = count of sites, y-axis is global FLR estimated as q-values.
