Table 2. Counts at pX FLR (Calculated by the Decoy Method) for 1, 5, and 10% Using Each FLR Method, Searching PXD007058 (Synthetic Data Set) (TPP, Fully Tryptic, 1% FDR).

	count at 1% FLR			count at 5% FLR			count at 10% FLR
	answer key	model	decoy	answer key	model	decoy	answer key	model	decoy
pAla	702	226	799	835	700	866	935	836	921
pGly	571	203	515	778	645	749	866	791	787
pLeu	632	229	665	843	710	823	938	844	914
pAsp	535	258	207	834	721	784	929	849	805
pGlu	722	232	841	858	734	952	975	866	n/a
pPro	636	206	621	817	692	768	883	832	823