Table 4. Counts at pX FLR for 1, 5, and 10% Using Each Decoy Method, Searching PXD000612 (Human Data Set) (TPP, Fully Tryptic, 1% FDR) Showing all PSMs (Not Collapsed) and Collapsed to Unique Sites.
| count
at 1% FLR |
count at 5% FLR |
count at 10% FLR |
||||
|---|---|---|---|---|---|---|
| not collapsed | collapsed | not collapsed | collapsed | no collapsed | collapsed | |
| pAla | 62,050 | 5246 | 95,924 | 9504 | 103,609 | 11,491 |
| pGly | 58,367 | 5557 | 86,752 | 9267 | 94,536 | 11,193 |
| pLeu | 3822 | 6705 | 98,875 | 10172 | 106,453 | 12,030 |
| pAsp | 2650 | 809 | 71,968 | 8458 | 86,451 | 10,052 |
| pGlu | 22,563 | 608 | 78,708 | 7819 | 94,337 | 10,092 |
| pPro | 47,942 | 3256 | 79,821 | 7384 | 90,430 | 9482 |