Fig. 3.

Characteristics of RepeatMasker hits and full-length reconstructed sequences. a) Average phylogenetic distance of detected L1 hits from RepeatMasker consensus models, for each subfamily in each ancestral genome. b) Length of L1 hits for each subfamily in each ancestral genome. c) Length of full-length ancestral reconstructed sequences for every subfamily, in every ancestral genome. d) Percent identity to gold standard sequences for full-length ancestral reconstructed sequences for every subfamily, in every ancestral genome. The highest identity to any gold standard (up to 3 for each subfamily) is shown.