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. 2022 Apr 11;34(7):2615–2637. doi: 10.1093/plcell/koac108

Figure 9.

Figure 9

Promoters of PAMP response genes are enriched in C5 TF binding sites. A, TF genes in the DEG clusters. X-axis shows the number of known TFs in each of the six expression clusters from Figure 8A. The Y-axis shows the ratio of number of TFs to the total number of genes in each cluster. B, Sequence logos of cluster 5 TFs for which a profile could be retrieved from the JASPAR database (see “Materials and methods,” Supplemental Data Set 9). Y-axis shows information content in bits. C, Enrichment of binding sites from C5 TFs in the promoter regions of C1 genes. Heatmap rows indicate cluster 5 TF models, whereas columns represent C1 promoter regions. Heatmap colors show the ratio of binding site matches to the genome-wide average in all promoters (see “Materials and methods”), with red indicating high over-representation. Right-most column shows the family of the respective TF. Similar enrichment analysis for genes in all differentially expressed clusters is shown in Supplemental Figure S8.