Table 4. Conformational changes in S1-RBD upon addition of PPS or PPS fractions, determined by far UV-CD.
P:L ratio | Helix | Antiparallel | Parallel | Turn | Others | NRMSD | |
---|---|---|---|---|---|---|---|
PPS | 0.0 | 4.3 | 35 | 0.5 | 12.1 | 48.0 | 0.044 |
0.2 | 4.5 | 37.7 | 0 | 12 | 45.9 | 0.026 | |
0.3 | 4.3 | 38 | 0 | 13.5 | 44.2 | 0.025 | |
0.9 | 7.3 | 34.5 | 2.8 | 12.3 | 43.2 | 0.020 | |
Fr-1.0M | 0.0 | 4.5 | 35 | 2.5 | 12.5 | 45.6 | 0.033 |
0.2 | 4.4 | 35.9 | 3.1 | 10.3 | 46.2 | 0.036 | |
0.3 | 4.1 | 36.4 | 0 | 13.4 | 46.1 | 0.026 | |
0.9 | 7 | 36.7 | 0 | 13.2 | 43.2 | 0.022 | |
Fr-1.2M | 0.0 | 6.4 | 37.7 | 0 | 15.2 | 40.7 | 0.044 |
0.2 | 3.8 | 39.3 | 0.3 | 9.5 | 47.0 | 0.039 | |
0.3 | 8.5 | 37.5 | 0.6 | 9.3 | 44.1 | 0.035 | |
0.9 | 3.8 | 39.4 | 0 | 14 | 42.8 | 0.039 | |
Fr-1.4M | 0.0 | 7.5 | 37.6 | 2.3 | 10.6 | 42.2 | 0.034 |
0.2 | 4.7 | 34.9 | 2.7 | 12.1 | 45.6 | 0.032 | |
0.3 | 4.1 | 35.4 | 1.6 | 14.1 | 44.7 | 0.026 | |
0.9 | 4.1 | 35 | 3.1 | 11.4 | 46.3 | 0.034 |
Abbreviations: NRMSD, normalized root-mean-square deviation; PPS, pentosan polysulfate; UV-CD, ultraviolet circular dichroism.