Table 2.
Primers for detection of colistin-resistant genes.
Target gene | Primer | Sequence (5′-3′) | Amplification product (bp) | Annealing temperature (°C) | Reference |
---|---|---|---|---|---|
mcr-1 | mcr-1F | ATCAGCCAAACCTATCCCATCG | 1257 | 55 | [18] |
mcr-1R | GCAGACGCACAGCAATGCCTAT | ||||
| |||||
mcr1_320 bp | mcr1_320 bp_F | AGTCCGTTTGTTCTTGTGGC | 320 | 58 | [19] |
mcr1_320 bp_R | AGATCCTTGGTCTCGGCTTG | ||||
| |||||
mcr-2 | mcr-2F | GCGATGGCGGTCTATCCTGTAT | 378 | 55 | [18] |
mcr-2R | TGCGATGACATGGGGTGTCAGC | ||||
| |||||
mcr-2_700 bp | mcr2_700 bp_F | CAAGTGTGTTGGTCGCAGTT | 715 | 58 | [19] |
mcr2_700 bp_R | TCTAGCCCGACAAGCATACC | ||||
| |||||
mcr-3 | mcr-3F | TATGGGTTACTATTGCTGG | 814 | 55 | [18] |
mcr-3R | CTACCCTGATGCTCATCG | ||||
| |||||
mcr3_900 bp | mcr3_900 bp_F | AAATAAAAATTGTTACGCTTATG | 929 | 58 | [19] |
mcr3_900 bp_R | AATGGAGATCCCCGTTTTT | ||||
| |||||
mcr-4 | mcr-4F | GTCATAGTGGTATAAAAGTACAG | 669 | 55 | [18] |
mcr-4R | CCACCGTCTATCAGAGCCAAC | ||||
| |||||
mcr_4_1100 bp | mcr_4_1100 bp_F | TCACTTTCATCACTGCGTTG | 1116 | 58 | [19] |
mcr_4_1100 bp_R | TTGGTCCATGACTACCAATG | ||||
| |||||
mcr-5 | mcr5_F | ATGCGGTTGTCTGCATTTATC | 1644 | 58 | [20] |
mcr5_R | TCATTGTGGTTGTCCTTTTCTG | ||||
| |||||
mmcr-5 | mcr-5F | GCGGTTGTCTGCATTTATCAC | 1042 | 50 | [18] |
mcr-5R | CTTTGAAAACCTGTCTTTGGCA | ||||
| |||||
mcr-6 | mcr-6F | GTCCGGTCAATCCCTATCTGT | 556 | 55 | [18] |
mcr-6R | ATCACGGGATTGACATAGCTAC | ||||
| |||||
mcr-7 | mcr-7F | TGCTCAAGCCCTTCTTTTCGT | 892 | 55 | [18] |
mmcr-7R | TTCATCTGCGCCACCTCGT | ||||
| |||||
mcr-8 | mcr-8F | AACCGCCAGAGCACAGAATT | 667 | 60 | [18] |
mcr-8R | TTCCCCCAGCGATTCTCCAT |