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. 2022 May 25;50(W1):W541–W550. doi: 10.1093/nar/gkac400

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© The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — The PADLOC web server pipeline and results. (A) The PADLOC web server handles the pre-processing of user input to allow for additional input types and the identification of CRISPR arrays and ncRNAs. (B) Users can upload their own genomes or run an example genome through the ‘Run PADLOC’ page. (C) User jobs are listed on the ‘My Results’ page. Completed jobs link to their individual results pages, failed jobs link to a log file that provides information on why the genome could not be analysed. (D) The individual results pages display a locus viewer, which shows each identified defence system in the context of its surrounding genes. (E) A summarised version of the results is displayed under the locus viewer for an initial inspection of the systems identified. (F) Users can download the full PADLOC output and other raw files from the bottom of the page.