Table 2.
Association of individual SLC12A3 gene variants and estimated glomerular filtration rate (cohort 1).
| SNP | Position | Role | Genotype | Frequency | Allele | MAF | HWE | r | P-value |
|---|---|---|---|---|---|---|---|---|---|
| rs16963397 | chr16:56927441 | Intron | C/C | 55 (6.2%) | G:C | 0.244 | 0.636 | 0.094 | 0.005 |
| C/G | 320 (36.3%) | ||||||||
| G/G | 507 (57.5%) | ||||||||
| rs13334864 | chr16:56929841 | Intron | C/C | 131 (14.9%) | T:C | 0.406 | <0.001 | 0.078 | 0.020 |
| C/T | 325 (36.8%) | ||||||||
| T/T | 426 (48.3%) | ||||||||
| rs7187932 | chr16:56931704 | Intron | A/A | 63 (7.1%) | G:A | 0.245 | 0.073 | 0.083 | 0.014 |
| A/G | 307 (34.8%) | ||||||||
| G/G | 512 (58.0%) | ||||||||
| rs12449275 | chr16:56937855 | Intron | A/A | 35 (4.0%) | G:A | 0.124 | <0.001 | 0.044 | 0.188 |
| A/G | 148 (16.8%) | ||||||||
| G/G | 699 (79.3%) | ||||||||
| rs12447287 | chr16:56937998 | Intron | C/C | 43 (4.9%) | T:C | 0.145 | <0.001 | 0.054 | 0.109 |
| C/T | 170 (19.3%) | ||||||||
| T/T | 669 (75.9%) | ||||||||
| rs1138429 | chr16:56942921 | Intron | A/A | 626 (71.0%) | A:T | 0.162 | 0.091 | 0.025 | 0.461 |
| A/T | 226 (25.6%) | ||||||||
| T/T | 30 (3.4%) |
HWE, Hardy-Weinberg equilibrium; MAF, minor allele frequency; r, correlation coefficient; SNP, single nucleotide polymorphisms.
Alleles shown are major:minor.