Table 1.

The Pathogen and Sequence Reads Detected by mNGS in Different Specimen Types

Sample Testing Time (Date)	Sputum	Blood	BALF
	June 12, 2021	June 12, 2021	June 22, 2021
Pathogen and Sequence Reads (n)	CMV (8) P. jirovecii (2110) Streptococcus peroris (18) Streptococcus parasanguinis (8) Rothia mucilaginosa (11) Staphylococcus saprophyticus (6)	CMV (23) P. jirovecii (32) Corynebacterium casei (15) Staphylococcus hominis (8) Staphylococcus saprophyticus (7) Staphylococcus epidermidis (2) Cutibacterium acnes (14) Moraxella osloensis (11) Micrococcus luteus (4)	CMV (140) P. jirovecii (17) EBV (1) Staphylococcus hominis (137) Cutibacterium acnes (439) Micrococcus luteus (188) Moraxella osloensis (332) Streptococcus peroris (23) Streptococcus mitis (15)

Abbreviations: CMV, cytomegalovirus; P. jiroveci, Pneumocystis jiroveci; EBV, Epstein-Barr virus.