Fig. 2.

Precision and recall when joint genotyping M. tuberculosis outbreak data. The left plot considers non-reference allele calls only, i.e., the variant sites that are genotyped to be different from the reference genome. The right plot shows the results when all allele calls are included. Individual samples are marked as dots, and the mean precision and recall for each tool is shown as a cross. The convex hull of the data points for each caller is shaded with an associated color