TABLE 7.
Summary of the identified active mediators from the data application on MESA study based on 10% FDR using the local FDR approach
Method | Selected mediators | Nearby genes | PIP | (95% CI) |
---|---|---|---|---|
Neighborhood SES → biomarkers → glucose | ||||
GMM-CorrS | cg19515398 | EIF2C2 | 0.97 | −0.013 (−0.026, 0.000) |
cg04000940 | MYBPC3 | 0.96 | 0.016 (0.000, 0.029) | |
cg17907003 | CD101 | 0.88 | 0.016 (0.000, 0.034) | |
cg27090988 | OGG1 | 0.84 | −0.011 (−0.024, 0.000) |
Note: We include the nearby gene, PIP, the posterior estimates (ie, the marginal indirect contribution of the jth mediator to the joint NIE) and its 95% credible interval (CI) for each selected CpG site. The one additional finding from GMM-CorrS is marked in blue. The GMM-Potts does not identify any active mediators based on 10% FDR.