Table 6.
Rooibos transcriptomes.
| A | B | C | D | |
|---|---|---|---|---|
| Total Mbps | 121.87 | 122.11 | 98.02 | 102.83 |
| Transcripts | 91,171 | 96,865 | 76,784 | 80,456 |
| 300–500 bp | 20,986 | 24,955 | 15,941 | 18,460 |
| 501–1000 bp | 22,161 | 24,463 | 19,885 | 20,767 |
| 1001–5000 bp | 47,231 | 46,736 | 40,701 | 40,674 |
| 5001–10 000 bp | 793 | 707 | 257 | 547 |
| >10,000 bp | 0 | 4 | 0 | 8 |
| Predicted ORFs | 85,234 | 91,301 | 75,426 | 79,234 |
| Overall read alignment rate (%) | 77.11 | 66.75 | 89.05 | 81.11 |
| Read pairs aligned concordantly ≥ 1× (%) | 60.63 | 51.94 | 75.86 | 63.66 |
| Read pairs aligned discordantly (%) | 7.63 | 5.60 | 8.74 | 8.57 |
| RIN | 8.3 | 7.1 | 7.9 | 8.1 |
| Complete BUSCOs (C) | 1291 | 1221 | 1230 | 1242 |
| Complete and single-copy BUSCOs (S) | 383 | 335 | 374 | 391 |
| Complete and duplicated BUSCOs (D) | 908 | 886 | 856 | 851 |
| Fragmented BUSCOs (F) | 48 | 65 | 59 | 62 |
| Missing BUSCOs (M) | 101 | 154 | 151 | 136 |