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. 2022 May 10;12(7):jkac114. doi: 10.1093/g3journal/jkac114

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© The Author(s) 2022. Published by Oxford University Press on behalf of Genetics Society of America.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 6. — GWA mapping with NemaScan recaptures previously validated QTVs. a) Significant genetic associations are shown genome-wide for five quantitative traits that were remapped using the 20210121 CeNDR release both with cegwas2-nf (“Previous Mappings”) and NemaScan, and the strength of the association is displayed in the right-hand panel. b) Quantile-quantile plots of all −log transformed P-values from cegwas2-nf, NemaScan using INBRED kinship matrix construction, and NemaScan using LOCO kinship matrix construction are plotted against their expected rank, with the horizontal line in each panel indicating the trait-specific multiple testing correction significance threshold. Genomic inflation (λ_GC) calculated from each mapping is displayed in the upper left of each panel.