REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Deposited data | ||
ClinVar database | NCBI | http://ftp.ncbi.nlm.nih.gov/pub/clinvar |
Human genome build (H. sapiens, GRCh37, hg19) | NCBI | http://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz |
dbSNP (build 151) | NCBI | http://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp151Common.txt.gz |
Software and algorithms | ||
Prime editor design algorithm and analysis scripts | This paper | http://gitlab.com/sanjanalab/primeediting |
Prime editing design tool | This paper | http://primeedit.nygenome.org/ |
FlashFry | McKenna and Shendure, 2018 | http://github.com/mckennalab/FlashFry/ |
Bedtools v2.29.2 | Quinlan and Hall, 2010 | http://github.com/arq5x/bedtools2/ |
R v3.4.4 | R-Project | http://www.r-project.org/ |
Biostrings v2.46.0 | Bioconductor | http://bioconductor.org/packages/release/bioc/html/Biostrings.html |
Python v3.7.0 | Python Software Foundation | http://python.org/ |