Table 1.
Description of SOX and MOX pangenomes
| Number of genes | Total length (bp) | Median gene length | GC content | Median (IQR) GC content per gene | Number of SNVs | SNVs/kbp | Median SNVs/kbp per gene | Number of genes with SNVs | pN/pS | Median pN/pS per gene | Median pS per gene | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SOX | Core | 1,522 | 1,386,003 | 735 | 0.374 | 0.380 (0.0502) | 17,835 | 12.87 | 11.9 | 1,332 | 88% | 0.135 | 0.09454 | 0.01613 |
| Single-copy accessory | 939 | 863,319 | 480 | 0.356 | 0.331 (0.0808) | 6,791 | 7.866 | 0 | 464 | 49% | 0.326 | 0.2432 | 0.009459 | |
| Multi-copy accessory | 23 | 21,735 | 765 | 0.379 | 789 | 36.30 | 28.6 | 22 | 96% | 0.404 | 0.2673 | 0.02461 | ||
| Total | 2,484 | 2,271,057 | ||||||||||||
| MOX | Core | 2,452 | 1,961,220 | 637.5 | 0.38 | 0.380 (0.0401) | 4,585 | 2.338 | 1.63 | 1,632 | 67% | 0.421 | 0.2656 | 0.003208 |
| Single-copy accessory | 379 | 254,967 | 510 | 0.329 | 0.359 (0.0559) | 245 | 0.9609 | 0 | 81 | 21% | 0.514 | 0.2637 | 0.002921 | |
| Multi-copy accessory | 35 | 19,686 | 402 | 0.377 | 496 | 25.20 | 17.3 | 31 | 89% | 0.323 | 0.4145 | 0.01460 | ||
| Total | 2,866 | 2,235,873 | ||||||||||||
Note.—Median pN/pS and median pS estimated among genes with at least one SNV. For the GC content analysis, single-copy and multi-copy accessory genes have been merged (see also supplementary fig. S1, Supplementary Material online). bp, base pair; kbp, kilobase pair; IQR, interquartile range.