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This figure depicts the compounds, RXNs, and genes included in the pentose phosphate pathway in A. thaliana, and the genes that are recovered by GENIE3 and iRF-LOOP. The resulting PEN from GENIE3 was thresholded to match the same size as the iRF-LOOP PEN. A) Steps in the pathway encompassing the three RXNs according to AraCyc. B) All of the possible edges between the known genes in neighboring steps in the pathway. C) The edges recovered by iRF-LOOP. D) The edges recovered by GENIE3.
