Table A.9.

This table depicts a sample fifth order gene set that were discovered using RIT on the resulting paths from iRF-LOOP on A. thaliana expression data. This set had a prevalence of 0.153. This set contains a mix of both known and unknown gene to gene relationships.

Gene ID	Function	Target	Target Function	Relation-ship
AT4G3860 – AT3G50370 – AT1G80070 – AT3G02260 – AT1G55860	Ubiquitin-Protein Ligase 3 (UPL3) – Hypothetical protein – Encodes a factor that influences pre-mRNA splicing and is required for embryonic development – Calossin-like protein required for polar auxin transport – Ubiquitin-Protein Ligase 1 (UPL1)	AT1G70320	Ubiquitin-Protein Ligase 2 (UPL2)	UPL1, UPL2, UPL3 are all ubiquitin protein ligases