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. Author manuscript; available in PMC: 2022 Jul 7.
Published in final edited form as: Biochemistry. 2021 Jun 2;60(24):1933–1946. doi: 10.1021/acs.biochem.1c00215

Table 4.

Data Collection and Refinement Statistics of HpAFLDA Structuresa

apo-HpAFLDA complex of HpAFLDA with MTCF
Unit Cell Data
space group P1211 P1211
cell parameters a = 73.29 Å, b = 73.29 Å, c = 157.49 Å a = 72.90 Å, b = 73.07 Å, c = 157.44 Å
α = 90.0°, β = 98.6°, γ = 90.0° α = 90.0°, β = 98.3°, γ = 90.0°
Vm3/Da) 2.2 2.2
no. of subunits in the asymmetric unit 4.0 4.0
Data Collection
beamline LRL-CAT LRL-CAT
wavelength (Å) 0.97931 0.97931
temperature (K) 100 100
resolution range (Å) 155.73–2.79 (2.90–2.79) 155.79–1.89 (1.92–1.89)
total no. of observed reflections 140666 (14721) 494028 (24293)
no. of unique reflections 39040 (4432) 129546 (6388)
Rmerge (%)b 22.7 (105.7) 12.1 (68.3)
CC1/2 (%) 97.7 (54.7) 99.2 (66.4)
I/σ(I)〉c 5.0 (1.3) 6.5 (1.9)
completeness (%) 94.2 (95.7) 98.8 (98.1)
multiplicity 3.6 (3.3) 3.8 (3.8)
Wilson B-factor (Å2) 34.7 21.0
Refinement
Rwork (%)d 25.0 23.1
Rfree (%)e 28.7 26.9
no. of atoms 12744 14029
protein 12570 12904
ligand 84
solvent 174 1041
model quality
root-mean-square deviation from ideal values
 bond lengths (Å) 0.006 0.003
 bond angles (deg) 0.98 0.73
average B-factor
 protein atoms (Å2) 41.3 26.2
 ligand atoms (Å2) 28.8
 waters (Å2) 30.5 31.4
Ramachandran plotf
 most favored regions (%) 94.1 96.6
 allowed regions (%) 5.4 3.2
 outlier regions (%) 0.5 0.2
PDB entry 7LKJ 7LKK
a

Values in parentheses refer to the highest-resolution shell.

b

Rmerge = [ΣhklΣi|Ii(hkl) − 〈I(hkl)〉|]/ΣhklΣiIi(hkl)〉, where Ii(hkl) is the intensity of the ith measurement of reflection (hkl) and 〈I(hkl)〉 is its mean intensity.

c

I is the integrated intensity, and σ(I) is its estimated standard deviation.

d

Rwork = (Σhkl|FoFc|)/ΣhklFo, where Fo and Fc are the observed and calculated structure factors, respectively.

e

Rfree is calculated as described for Rwork but from a randomly selected subset of the data (5%), which were excluded from the refinement calculation.

f

Calculated by MOLPROBITY.