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. 2022 Jul 7;22:603. doi: 10.1186/s12879-022-07558-1

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© The Author(s) 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 7 — Phylogenetic tree of United States K. pneumoniae bloodstream isolates. Maximum likelihood phylogenetic tree generated from core genome SNP loci in 1067 K. pneumoniae bloodstream isolates (NMH and NCBI). Sequence types, capsule loci, and the presence of virulence and antibiotic resistance genes are indicated. iuc = aerobactin biosynthesis genes, CR = contains a carbapenemase, ESBL = contains an extended-spectrum beta-lactamase gene, NMH = isolate was collected from Northwestern Memorial Hospital. The complete genome of NTUH-K2044 was used as the reference genome. Branch lengths are not to scale