Table 1. Numbers of Total Detected Features and DAFs in Each of the Eight Developmental Stage x Tissue Type Sample Classes.
| no.
of DAFsb |
||||
|---|---|---|---|---|
| developmentalstage xtissue type | no. of total detected featuresa | upland-enriched | lowland-enriched | total |
| vegetative-stagex shoot | 1035 | 126 | 130 | 256 |
| vegetative-stagex root | 879 | 149 | 161 | 310 |
| transition-stagex shoot | 1037 | 155 | 133 | 288 |
| transition-stagex rhizome | 1114 | 268 | 139 | 407 |
| transition-stagex root | 965 | 226 | 235 | 461 |
| reproductive-stagex shoot | 1612 | 100 | 200 | 300 |
| reproductive-stagex rhizome | 1378 | 324 | 229 | 553 |
| reproductive-stagex root | 1327 | 408 | 309 | 717 |
a
Sum of the numbers in this column is larger than the numbers of the total detected features (2586) as some features were counted multiple times in several sample classes.
b
Sum of the numbers in the column of total is larger than the total detected unique DAFs (1416) as some DAFs were counted multiple times. The detailed information regarding these DAFs can be found in Tables S2–S9. Criteria for the DAFs: false discovery rate (FDR) adjusted p ≤ 0.05; fold changes ≥2.