Table 9.
Summary of data sources used to build predictive models of cancer prognosis.
| Type of Repository |
Repositories & Programs/Studies | Used by |
|---|---|---|
| Public Repositories |
ICGC Data Portal (e.g., Pan-Cancer Atlas Initiative, TCGA Program) | [61,69,76,77,80,83,85,87,88,89,90,91,92,93,94,95,97,99,100,102,103,104,105,106,107,108,109,110] |
| EGA (e.g., METABRIC Study) | [79,82,83,89,96,98,109] | |
| GDC Data Portal (e.g., TARGET Program) | [61,76,78,95] | |
| GEO | [61,95,106,108,109,110] | |
| COSMIC | [85] | |
| ArrayExpress Archive of Functional Genomics Data | [61] | |
| Institutional databases | N/A | [71,72,73,74,75,81,82,84,86,87,101] |
Abbreviations: ICGC, International Cancer Genome Consortium; TCGA, The Cancer Genome Atlas; EGA, European Genome-Phenome Archive; METABRIC, Molecular Taxonomy of Breast Cancer International Consortium; GDC, Genomics Data Commons; GEO, Gene Expression Omnibus; COSMIC, Catalogue of Somatic Mutations in Cancer.