Table 2.
Differentially expressed circRNAs in TNBC.
| Host Gene | Strand | circRNA | BaseMean | Log2FC | Padj |
|---|---|---|---|---|---|
| LIFR | − | hsa_circ_0072309 | 7.478 | −2.392 | 4.68 × 10−11 |
| SEMA3C | − | hsa_circ_0004365 | 5.284 | −2.347 | 6.61 × 10−10 |
| MIR31HG | − | hsa_circ_0008599 | 3.758 | −1.981 | 3.61 × 10−06 |
| EXOC6B | − | hsa_circ_0009043 | 10.768 | −1.955 | 2.74 × 10−07 |
| WDR78 | − | hsa_circ_0006677 | 8.343 | −1.931 | 1.29 × 10−07 |
| FAM126A | − | hsa_circ_0008951 | 4.761 | −1.925 | 2.74 × 10−07 |
| ACVR2A | + | hsa_circ_0001073 | 11.392 | −1.895 | 3.01 × 10−07 |
| RMST | + | hsa_circ_0099634 | 3.223 | −1.846 | 8.57 × 10−05 |
| N4BP2L2 | − | hsa_circ_0000471 | 24.928 | −1.825 | 3.61 × 10−06 |
| RHOBTB3 | + | hsa_circ_0007444 | 8.915 | −1.700 | 1.66 × 10−04 |
| SEMA3C | − | hsa_circ_0002714 | 2.767 | −1.693 | 2.00 × 10−04 |
| FGFR1 | − | hsa_circ_0008016 | 2.983 | −1.641 | 3.11 × 10−04 |
| RBM23 | − | hsa_circ_0000524 | 7.974 | −1.626 | 8.57 × 10−05 |
| PRDM5 | − | hsa_circ_0005654 | 2.864 | −1.584 | 5.28 × 10−04 |
| NFIB | − | hsa_circ_0086376 | 7.423 | −1.540 | 2.00 × 10−04 |
| TPTEP1 | + | chr22:17117929-17119630 | 5.560 | −1.522 | 2.76 × 10−03 |
| EPSTI1 | − | hsa_circ_0000479 * | 4.422 | 1.560 | 2.55 × 10−04 |
* Predicted by DCC and CircExplorer2. Strand = − (antisense) and + (sense); CircRNA = circular RNA; Log2FC = Log2 Fold Change; padj = adjusted p-value.