Table 2.
Virulence genes with >2-fold greater representation in the non-IPEC dataset.
| Virulence Gene | IPEC | Non-IPEC | Non-IPEC/IPEC |
|---|---|---|---|
| tsh | 2.78% | 14.01% | 5.046 |
| etsC | 5.12% | 25.35% | 4.954 |
| clbB | 1.89% | 9.36% | 4.945 |
| vat | 3.55% | 17.56% | 4.941 |
| cnf1 | 1.55% | 7.61% | 4.911 |
| hlyF | 5.61% | 27.14% | 4.842 |
| f17A | 0.75% | 3.61% | 4.817 |
| iroE | 6.98% | 33.39% | 4.785 |
| sfaF | 1.59% | 7.58% | 4.759 |
| iroN | 7.06% | 33.54% | 4.751 |
| focI | 0.97% | 4.58% | 4.742 |
| papH | 1.59% | 7.53% | 4.721 |
| tcpC | 1.26% | 5.96% | 4.721 |
| f17G | 0.72% | 3.39% | 4.697 |
| focG | 0.88% | 4.09% | 4.636 |
| papA | 4.77% | 21.94% | 4.594 |
| usp | 4.99% | 22.92% | 4.592 |
| focC | 0.77% | 3.45% | 4.506 |
| papF | 3.45% | 15.45% | 4.478 |
| kpsM | 6.37% | 28.21% | 4.429 |
| papC | 5.88% | 25.88% | 4.402 |
| ibeA | 1.95% | 8.47% | 4.339 |
| sfaD | 0.88% | 3.75% | 4.246 |
| papE | 2.09% | 8.86% | 4.231 |
| sslE | 3.64% | 15.35% | 4.217 |
| cvaC | 4.87% | 20.40% | 4.189 |
| iucD | 0.12% | 0.49% | 4.138 |
| iucB | 0.12% | 0.50% | 4.081 |
| yfcV | 6.25% | 24.80% | 3.967 |
| nfaE | 0.50% | 1.98% | 3.951 |
| sfaS | 0.54% | 2.08% | 3.843 |
| sfaE | 0.21% | 0.81% | 3.785 |
| lngA | 0.25% | 0.92% | 3.733 |
| kpsE | 8.46% | 31.45% | 3.720 |
| air | 2.44% | 8.90% | 3.653 |
| afaE | 0.29% | 1.04% | 3.646 |
| ltcA | 0.41% | 1.49% | 3.586 |
| hlyE | 0.22% | 0.77% | 3.574 |
| eilA | 3.36% | 11.61% | 3.450 |
| eatA | 0.50% | 1.72% | 3.435 |
| mchF | 8.09% | 27.61% | 3.413 |
| sat | 3.05% | 9.90% | 3.241 |
| hra | 9.97% | 30.19% | 3.029 |
| iroD | 0.02% | 0.06% | 2.931 |
| afaB | 1.15% | 3.33% | 2.906 |
| afaA | 1.17% | 3.34% | 2.853 |
| cma | 5.63% | 14.75% | 2.618 |
| afaC | 1.01% | 2.58% | 2.541 |
| ccI | 0.13% | 0.32% | 2.407 |
| mchB | 3.59% | 8.65% | 2.406 |
| afaD | 1.64% | 3.93% | 2.398 |
| faeG | 0.02% | 0.05% | 2.345 |
| ireA | 3.99% | 9.31% | 2.333 |
| iroB | 0.02% | 0.04% | 2.261 |
| iroC | 0.02% | 0.04% | 2.261 |
| neuC | 4.04% | 8.29% | 2.054 |