Table 1.
Reuse of terms from pre-existing external ontologies, imported in ONS for completing the modeling in this manuscript.
| Ontology | Prefix | Web Reference | Citation |
|---|---|---|---|
| Food Ontology | FOODON |
https://foodon.org/ (accessed on 28 April 2022) |
[8] |
| Relation Ontology | RO |
https://oborel.github.io/ (accessed on 28 April 2022 |
|
| Gene Ontology | GO |
http://geneontology.org/ (accessed on 28 April 2022) |
[15,16] |
| Chemical Entities of Biological Interest | CHEBI |
https://www.ebi.ac.uk/chebi/ (accessed on 28 April 2022) |
[17] |
| NCBI organismal classification | NCBITaxon |
https://github.com/obophenotype/ncbitaxon (accessed on 28 April 2022) |
|
| Information Artifact Ontology | IAO |
https://github.com/information-artifact-ontology/IAO/ (accessed on 28 April 2022) |
|
| Units of measurement ontology | UO |
https://github.com/bio-ontology-research-group/unit-ontology (accessed on 28 April 2022) |
[18] |
| Ontology of Microbial Phenotypes | OMP |
https://microbialphenotypes.org/wiki/index.php?title%20=%20Main_Page (accessed on 28 April 2022) |
[19] |
| NCI Thesaurus OBO Edition | NCIT |
https://github.com/NCI-Thesaurus/thesaurus-obo-edition (accessed on 28 April 2022) |
|
| Uberon multi-species anatomy ontology | UBERON |
http://obophenotype.github.io/uberon/ (accessed on 28 April 2022) |
[20] |
| Phenotype And Trait Ontology | PATO |
https://github.com/pato-ontology/pato/ (accessed on 28 April 2022) |
|
| Human Phenotype Ontology | HP |
https://hpo.jax.org/app/ (accessed on 28 April 2022) |
[21] |