Table 1.
Summary statistics of U. compressa genome and comparison with U. mutabilis.
| Genome | U. compressa | U. mutabilis |
|---|---|---|
| Genome size | 80.8 Mb | 98.5 Mb |
| Number of scaffolds | 2601 | 318 |
| Scaffolds N50 | 0.46 Mb | 0.6 Mb |
| Scaffolds L50 | 48 | 46 |
| Percentage of GC content | 57.3% | 57.2% |
| Number of protein coding genes | 19,207 | 12,924 |
| Gene density | 238 genes/Mb | 131 genes/Mb |
| Average intron per gene | 3.6 | nd |
| Average exon length | 322 bp | nd |
| Average intron length | 479 bp | nd |
| Number of exons in CDS | 88,404 | nd |
| Number of introns in CDS | 69,134 | nd |
| Percentage of core genes | 80% | 92% |
| Repetitive elements (RE) | 18.9% | 35% |
| LINE | 1.77% | 15.1% |
| LTR | 1.52% | 9.4% |
| DNA elements | 0.61% | |
| Unknown RE | 15.04% | 10.5% |
| Number of rRNAs | 18 | nd |
| Number of tRNAs | 109 | nd |
| Number of snoRNAs | 27 | nd |
| Number of snRNAs | 11 | nd |
| Number of primary miRNAs | 87 | nd |
nd: not determined.