Table 3.
A key to navigate synteny across largest fragments of the reference genome assembly relative to Anolis, Podarcis, and Gallus, according to the Gekko hokouensis (Gekko) physical mapping
| Sphaerodactylus townsendi | Anolis carolinensis | Podarcis muralis |
Gallus
gallus |
Gekko hokouensis |
|---|---|---|---|---|
| LG1 | 1q | 3 | 3 | 1p |
| LG2 | 1p | 1 | 5,7 | 2 |
| LG3 (XY) | 2q | 2 | 12,13,16,18,30,33 | 1q |
| LG4 | 3q | 4 | 1q,14 | 13 |
| LG5 | 4q | 6,18 | 8,26,28 | 3 |
| LG6 | 5p | 10 | 1p,23 | 14 |
| LG7 | 2p | 11,17 | ZW | ZW |
| LG8 | 3p | 5,14 | 6,9 | 15 |
| LG9 | 4p | 7 | 2q | unplaced |
| LG10 | micro | 9 | 4q | 7 |
| LG11 | 6q | 12 | 2p,27 | 8 |
| LG12 | micro | 15,ZW | 17,22,24*** | 9 |
| LG13 | micro | 16,ZW | 4p,15 | 11 |
| LG14 | 4 | 8 | 11 | unplaced |
| LG15 | 6p | 13 | 27 | 12 |
| LG16 | micro | 8 | 21 | unplaced |
| LG17 | micro | 14 | 10 | unplaced |
Scaffolds were called if linkage groups described by Srikulnath et al. (2015) were corroborated by syntenic mapping to Anolis, Podarcis, and/or Gallus. Note that the snake (Naja) was omitted due to its collinearity with Anolis genome.
*** indicates changes in annotated chicken chromosomes making up the linkage group from that reported by Srikulnath et al. (2015) from “21 and 25” to “22 and 24.”