Table 4.
Candidate genes that include significantly associated SNPs for traits involved in drought tolerance.
| Gene ID | SNPs | Chr. | Position | Ref | Alt | Traits | Ortholog | Annotation |
|---|---|---|---|---|---|---|---|---|
| Gh_A10G0304 | TM33865 | A10 | 2761881 | C | A | LDW | AT5G45650.2 | Subtilase family protein |
| Gh_A13G1963 | TM47696 | A13 | 79134335 | A | C | LDW | AT2G29560.1 | A putative phosphoenolpyruvate enolase |
| Gh_A05G0492 | TM10267 | A5 | 5328342 | G | A | LEAVES | AT5G25080.1 | Sas10/Utp3/C1D family |
| Gh_A07G0173 | TM18554 | A7 | 2232287 | G | A | LFW | AT5G11520.1 | The chloroplastic isozyme of aspartate aminotransferase |
| Gh_D05G1158 | TM57176 | D5 | 9970466 | A | C | LA | AT1G15780.3 | Mediator of RNA polymerase II transcription subunit 15a-like protein |
| Gh_D06G0687 | TM59675 | D6 | 11881468 | A | G | LWW | AT4G27190.1 | NB-ARC domain-containing disease resistance protein |
| Gh_D06G0689 | TM59677 | D6 | 11906406 | G | A | LWW | AT5G11700.2 | Ephrin type-B receptor |
| Gh_D08G2462 | TM69863 | D8 | 64527910 | A | C | CHL | AT5G11270.1 | A homeodomain transcription factor |
CHL, chlorophyll content; LA, leaf area; LEAVES, number of leaves; LFW, leaf fresh weight; LWW, leaf wilted weight; and LDW, leaf dry weight.