Antibodies |
|
Mouse monoclonal anti-nc82 |
DSHB |
Cat # nc82; RRID:AB_2314866
|
Rabbit polyclonal anti-GFP |
Thermo Fisher Scientific |
Cat # A6455; RRID: AB_221570
|
Alexa Fluor 633 conjugated goat anti-mouse |
Thermo Fisher Scientific |
Cat # A21050; RRID: AB_2535718
|
Alexa Fluor 488 conjugated goat anti-rabbit |
Thermo Fisher Scientific |
Cat # A11008; RRID: AB_143165
|
Rabbit monoclonal anti-HA |
Cell Signaling Technologies |
Cat # 3724S; RRID:AB_1549585
|
Rat monoclonal anti-FLAG |
Novus Biologicals |
Cat # NBP1-06712; RRID:AB_1625981
|
Alexa Fluor 594 conjugated goat anti-rabbit |
Thermo Fisher Scientific |
Cat # A-11012; RRID:AB_2534079
|
Alexa Fluor 647 conjugated goat anti-rat |
Thermo Fisher Scientific |
Cat # A-21247; RRID:AB_141778
|
Alexa Fluor 488 conjugated goat anti-mouse |
Thermo Fisher Scientific |
Cat # A28175; RRID:AB_2536161
|
Mouse monoclonal anti V5-tag:DyLight®550 |
Bio-Rad |
Cat # MCA1360D550GA; RRID:AB_2687576
|
|
Chemicals, peptides, and recombinant proteins |
|
Histamine |
Sigma |
Cat # H7125 |
All trans-retinal |
Sigma |
Cat # R2500 |
Collagenase IV |
Worthington |
Cat # CLS-4 |
Biocytin hydrazide |
Thermo Fisher Scientific |
Cat # B1603 |
Alexa Fluor 568 Hydrazide |
Thermo Fisher Scientific |
Cat # A10437 |
PFA |
Electron Microscopy Sciences |
Cat # 15710 |
Normal mouse serum |
Jackson Immuno Research Laboratories |
Cat # 015-000-120 |
Normal goat serum |
Life Technologies |
Cat # PCN5000 |
Vectashield |
Vector Laboratories |
Cat # H-1200 |
|
Deposited data |
|
Custom MATLAB codes |
This paper |
https://github.com/ChiappeLab/Analysis-Walking-Stride-Modulation |
|
Experimental models: Organisms/strains |
|
Drosophila melanogaster: w+; UAS-Ort; +
|
Rister et al., 2007 |
N/A |
Drosophila melanogaster: w∗; UAS-2xEGFP; + |
Bloomington Drosophila Stock Center (BDSC) |
RRID: BDSC_6874 |
Drosophila melanogaster: w1118; +; VT058487-GAL4
|
Vienna Drosophila Resource Center (VDRC) |
N/A |
Drosophila melanogaster: wDL |
Tammero and Dickinson, 2002 |
N/A |
Drosophila melanogaster: w1118; +; R81G07-GAL4
|
BDSC |
RRID: BDSC_40122 |
Drosophila melanogaster: w∗, NorpA[36] |
BDSC |
RRID: BDSC_9048 |
Drosophila melanogaster: w1118; +; 20XUAS-IVS-CsChrimson.mVenus
|
BDSC |
RRID: BDSC_55136 |
Drosophila melanogaster: w1118; R39E01-lexA; +
|
BDSC |
RRID: BDSC_52776 |
Drosophila melanogaster: y1 w∗; 13XLexAop2-6XGFP(VK00018)/CyO; Dr1/TM6C, Sb1 Tb1 |
BDSC |
RRID: BDSC_52265 |
Drosophila melanogaster: y1 w∗; wgSp-1/CyO; 20XUAS-6XGFP(attp2) |
BDSC |
RRID: BDSC_52262 |
Drosophila melanogaster: w1118; R11H10-p65.AD(attp40); VT025925-ZpGal4DBD(attp2)
|
Bidaye et al., 2020 and Salil Bidaye |
N/A |
Drosophila melanogaster: w, 5-40-GAL4; dacREFLP;+ |
Giorgianni and Mann, 2011; Hughes and Thomas, 2007 and César S Mendes |
N/A |
Drosophila melanogaster: w∗; UAS-FRT-stop-FRT-TNT/Cyo; +
|
BDSC |
RRID: BDSC_67690 |
Drosophila melanogaster: w1118; R27B03-p65.AD(attp40); +
|
BDSC |
RRID: BDSC_70164 |
Drosophila melanogaster: w1118; +; VT058488-GAL4.DBD(attp2)
|
BDSC |
RRID: BDSC_72871 |
Drosophila melanogaster: w1118; p65-AD.empty(attp40); GAL4-DBD.empty(attp2)
|
BDSC |
RRID: BDSC_79603 |
Drosophila melanogaster: w∗; +; UAS-ReaChR(VK00005)
|
BDSC |
RRID: BDSC_53749 |
Drosophila melanogaster: w1118; R46A02-p65.AD(attp40); +
|
BDSC |
RRID: BDSC_71064 |
Drosophila melanogaster: w1118; R34E09-p65.AD(attp40); VT023823-GAL4.DBD(attp2)/TM6B
|
BDSC |
RRID: BDSC_86632 |
Drosophila melanogaster: wDL; wDL; 10XUAS-IVS-eGFPKir2.1(attP2) |
von Reyn et al., 2014 and Gwyneth Card |
N/A |
Drosophila melanogaster: w1118; UAS-sytGCaMP6s(attp40)/Cyo; TM2/TM6B
|
Cohn et al., 2015 and Vanessa Ruta |
N/A |
Drosophila melanogaster: w1118; +; UAS-CD4-Tdtomato(VK00033)
|
BDSC |
RRID: BDSC_35837 |
Drosophila melanogaster: w1118, hs-FLPG5.PEST; +; 10xUAS(FRT.stop)myr::smGdP-HA (VK00005), 10xUAS(FRT.stop)myr::smGdP-V5-THS-10xUAS(FRT.stop)myr::smGdP-FLAG(su(Hw)attP1)
|
BDSC |
RRID: BDSC_64085 |
|
Software and algorithms |
|
MATLAB |
The Mathworks |
https://www.mathworks.com |
JAABA |
Kabra et al., 2013 |
http://jaaba.sourceforge.net |
DeepLabCut |
Mathis et al., 2018 |
https://github.com/DeepLabCut |
Ephus |
Suter et al., 2010 |
http://scanimage.vidriotechnologies.com/display/ephus/Ephus |
ScanImage |
Pologruto et al., 2003 |
http://scanimage.vidriotechnologies.com/display/ephus/ScanImage |
NeuPrint |
Scheffer et al., 2020 |
https://neuprint.janelia.org |
Computational Morphology Toolkit (CMTK) |
Rohlfing and Maurer, 2003 |
https://www.nitrc.org/projects/cmtk/ |
Natverse |
Bates et al., 2020 |
https://natverse.org |
Color-Depth MIP |
Otsuna et al., 2018 |
https://www.janelia.org/open-science/color-depth-mip |
DeepEthogram |
Bohnslav et al., 2021 |
https://github.com/jbohnslav/deepethogram |