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. 2022 Jul 6;110(13):2124–2138.e8. doi: 10.1016/j.neuron.2022.04.008
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse monoclonal anti-nc82 DSHB Cat # nc82; RRID:AB_2314866
Rabbit polyclonal anti-GFP Thermo Fisher Scientific Cat # A6455; RRID: AB_221570
Alexa Fluor 633 conjugated goat anti-mouse Thermo Fisher Scientific Cat # A21050; RRID: AB_2535718
Alexa Fluor 488 conjugated goat anti-rabbit Thermo Fisher Scientific Cat # A11008; RRID: AB_143165
Rabbit monoclonal anti-HA Cell Signaling Technologies Cat # 3724S; RRID:AB_1549585
Rat monoclonal anti-FLAG Novus Biologicals Cat # NBP1-06712; RRID:AB_1625981
Alexa Fluor 594 conjugated goat anti-rabbit Thermo Fisher Scientific Cat # A-11012; RRID:AB_2534079
Alexa Fluor 647 conjugated goat anti-rat Thermo Fisher Scientific Cat # A-21247; RRID:AB_141778
Alexa Fluor 488 conjugated goat anti-mouse Thermo Fisher Scientific Cat # A28175; RRID:AB_2536161
Mouse monoclonal anti V5-tag:DyLight®550 Bio-Rad Cat # MCA1360D550GA; RRID:AB_2687576

Chemicals, peptides, and recombinant proteins

Histamine Sigma Cat # H7125
All trans-retinal Sigma Cat # R2500
Collagenase IV Worthington Cat # CLS-4
Biocytin hydrazide Thermo Fisher Scientific Cat # B1603
Alexa Fluor 568 Hydrazide Thermo Fisher Scientific Cat # A10437
PFA Electron Microscopy Sciences Cat # 15710
Normal mouse serum Jackson Immuno Research Laboratories Cat # 015-000-120
Normal goat serum Life Technologies Cat # PCN5000
Vectashield Vector Laboratories Cat # H-1200

Deposited data

Custom MATLAB codes This paper https://github.com/ChiappeLab/Analysis-Walking-Stride-Modulation

Experimental models: Organisms/strains

Drosophila melanogaster: w+; UAS-Ort; + Rister et al., 2007 N/A
Drosophila melanogaster: w; UAS-2xEGFP; + Bloomington Drosophila Stock Center (BDSC) RRID: BDSC_6874
Drosophila melanogaster: w1118; +; VT058487-GAL4 Vienna Drosophila Resource Center (VDRC) N/A
Drosophila melanogaster: wDL Tammero and Dickinson, 2002 N/A
Drosophila melanogaster: w1118; +; R81G07-GAL4 BDSC RRID: BDSC_40122
Drosophila melanogaster: w, NorpA[36] BDSC RRID: BDSC_9048
Drosophila melanogaster: w1118; +; 20XUAS-IVS-CsChrimson.mVenus BDSC RRID: BDSC_55136
Drosophila melanogaster: w1118; R39E01-lexA; + BDSC RRID: BDSC_52776
Drosophila melanogaster: y1 w; 13XLexAop2-6XGFP(VK00018)/CyO; Dr1/TM6C, Sb1 Tb1 BDSC RRID: BDSC_52265
Drosophila melanogaster: y1 w; wgSp-1/CyO; 20XUAS-6XGFP(attp2) BDSC RRID: BDSC_52262
Drosophila melanogaster: w1118; R11H10-p65.AD(attp40); VT025925-ZpGal4DBD(attp2) Bidaye et al., 2020 and Salil Bidaye N/A
Drosophila melanogaster: w, 5-40-GAL4; dacREFLP;+ Giorgianni and Mann, 2011; Hughes and Thomas, 2007 and César S Mendes N/A
Drosophila melanogaster: w; UAS-FRT-stop-FRT-TNT/Cyo; + BDSC RRID: BDSC_67690
Drosophila melanogaster: w1118; R27B03-p65.AD(attp40); + BDSC RRID: BDSC_70164
Drosophila melanogaster: w1118; +; VT058488-GAL4.DBD(attp2) BDSC RRID: BDSC_72871
Drosophila melanogaster: w1118; p65-AD.empty(attp40); GAL4-DBD.empty(attp2) BDSC RRID: BDSC_79603
Drosophila melanogaster: w; +; UAS-ReaChR(VK00005) BDSC RRID: BDSC_53749
Drosophila melanogaster: w1118; R46A02-p65.AD(attp40); + BDSC RRID: BDSC_71064
Drosophila melanogaster: w1118; R34E09-p65.AD(attp40); VT023823-GAL4.DBD(attp2)/TM6B BDSC RRID: BDSC_86632
Drosophila melanogaster: wDL; wDL; 10XUAS-IVS-eGFPKir2.1(attP2) von Reyn et al., 2014 and Gwyneth Card N/A
Drosophila melanogaster: w1118; UAS-sytGCaMP6s(attp40)/Cyo; TM2/TM6B Cohn et al., 2015 and Vanessa Ruta N/A
Drosophila melanogaster: w1118; +; UAS-CD4-Tdtomato(VK00033) BDSC RRID: BDSC_35837
Drosophila melanogaster: w1118, hs-FLPG5.PEST; +; 10xUAS(FRT.stop)myr::smGdP-HA (VK00005), 10xUAS(FRT.stop)myr::smGdP-V5-THS-10xUAS(FRT.stop)myr::smGdP-FLAG(su(Hw)attP1) BDSC RRID: BDSC_64085

Software and algorithms

MATLAB The Mathworks https://www.mathworks.com
JAABA Kabra et al., 2013 http://jaaba.sourceforge.net
DeepLabCut Mathis et al., 2018 https://github.com/DeepLabCut
Ephus Suter et al., 2010 http://scanimage.vidriotechnologies.com/display/ephus/Ephus
ScanImage Pologruto et al., 2003 http://scanimage.vidriotechnologies.com/display/ephus/ScanImage
NeuPrint Scheffer et al., 2020 https://neuprint.janelia.org
Computational Morphology Toolkit (CMTK) Rohlfing and Maurer, 2003 https://www.nitrc.org/projects/cmtk/
Natverse Bates et al., 2020 https://natverse.org
Color-Depth MIP Otsuna et al., 2018 https://www.janelia.org/open-science/color-depth-mip
DeepEthogram Bohnslav et al., 2021 https://github.com/jbohnslav/deepethogram