TABLE 2.
RIS-RFLP phylotype | Occurrencea
|
Representative Kmlps clone(s)b | Affiliationc (reference strain) | Identity to reference strain (%) | Identity within cluster (%) | ||
---|---|---|---|---|---|---|---|
SEP-0 | SEP-3 | SEP-6 | |||||
1 | 9 | 2 | 0-1/3-15 | M. flagellatum KT1 | 94.4/95.1 | 98.4–99.5 | |
2 | 7 | 1 | 0-4/3-24 | M. flagellatum KT1 | 94.6/95.1 | ||
3 | 2 | 1 | 0-23/3-8 | M. flagellatum KT1 | 94.2/94.6 | ||
4 | 2 | 3-20 | M. flagellatum KT1 | 94.2 | |||
5 | 1 | 0-28 | A. lipoferum NCIMB 11861 | 96.4 | 99.1–99.5 | ||
6 | 1 | 1 | 0-16/3-13 | A. lipoferum NCIMB 11861 | 95.5/95.5 | ||
7 | 1 | 1 | 0-27/3-19 | A. lipoferum NCIMB 11861 | 96.2/96.2 | ||
8 | 1 | 2 | 0-12/3-2 | B. putredinis ATCC 29800 | 83.9/84.0 | 99.3–99.7 | |
9 | 1 | 0-2 | B. putredinis ATCC 29800 | 83.9 | |||
10 | 2 | 3-12 | B. putredinis ATCC 29800 | 84.0 | |||
11 | 1 | 3-31 | B. putredinis ATCC 29800 | 83.7 | |||
12 | 1 | 4 | 1 | 0-17/3-1/6-18 | Mitochondrion of R. americana ATCC 50394 | 91.1/90.7/91.3 | 98.7–99.7 |
13 | 2 | 3-7 | Mitochondrion of R. americana ATCC 50394 | 90.9 | |||
14 | 1 | 3-29 | Mitochondrion of R. americana ATCC 50394 | 90.9 | |||
15 | 2 | 6-7 | Mitochondrion of R. americana ATCC 50394 | 91.1 | |||
16 | 1 | 6-23 | Mitochondrion of R. americana ATCC 50394 | 90.7 |
Number of clones from each sample belonging to each phylotype.
Rows with multiple clones indicate representative phylotypes from each sample.
Organism in RDP with most similar rDNA sequence.