Table 3.
Summary and identification of the up-regulated genes associated with phytohormone pathways in response to TSA treatment
| Gene ID | Gene name | ANNOTATION | Regulated type | Fold change (Log2) | Associated pathway |
|---|---|---|---|---|---|
| Gh_A01G1955 | GhAUX1_A01 | AUXIN RESISTANT 1 | Up | 1.26685 | Auxin |
| Gh_A05G3362 | GhGH3.17_A05 | ENCODING A PROTEIN SIMILAR TO IAA-AMIDO SYNTHASES GH3.17 | Up | 1.51936 | Auxin |
| Gossypium_hirsutum_newGene_7580 | GhGH3.6_N | ENCODING A PROTEIN SIMILAR TO IAA-AMIDO SYNTHASES GH3.17 | Up | 1.49656 | Auxin |
| Gh_D08G1987 | GhGH3.7_D08 | ENCODING A PROTEIN SIMILAR TO IAA-AMIDO SYNTHASES GH3.17 | Up | 1.48741 | Auxin |
| Gh_A06G0351 | GhLAX3_A06 | LIKE AUX1 3 | Up | 1.23712 | Auxin |
| Gh_A03G1990 | GhSAUR34_A03 | SMALL AUXIN UP-REGULATED RNA34 | Up | 1.10734 | Auxin |
| Gh_D03G1541 | GhSAUR34_D03 | Up | 1.33354 | Auxin | |
| Gh_D08G1114 | GhSAUR31_D08 | SMALL AUXIN UP-REGULATED RNA31 | Up | 1.02448 | Auxin |
| Gh_A12G2237 | GhSAUR31_A12 | Up | 2.45374 | Auxin | |
| Gh_D13G2504 | GhSAUR49_D13 | SMALL AUXIN UP-REGULATED RNA49 | Up | 1.49511 | Auxin |
| Gh_A03G1766 | GhSAUR50_A03 | SMALL AUXIN UP-REGULATED RNA50 | Up | 2.5748 | Auxin |
| Gh_D12G2759 | GhSAUR55_D12 | SMALL AUXIN UP-REGULATED RNA55 | Up | 1.99109 | Auxin |
| Gh_D08G2457 | GhSAUR72_D08 | SMALL AUXIN UP-REGULATED RNA55 | Up | 1.0073 | Auxin |
| Gh_D08G1506 | GhSAUR59_D08 | SMALL AUXIN UP-REGULATED RNA55 | Up | 1.68807 | Auxin |
| Gh_D02G2199 | GhSAUR8_D02 | SMALL AUXIN UP-REGULATED RNA55 | Up | 2.19574 | Auxin |
| Gh_A08G2199 | GhJAZ1_A08 | JASMONATE-ZIM-DOMAIN PROTEIN 1 | Up | 1.82836 | JA |
| Gh_D08G2564 | GhJAZ1_D08 | Up | 1.7424 | JA | |
| Gh_A05G0260 | GhJAZ1_A05 | Up | 1.79396 | JA | |
| Gh_D05G0352 | GhJAZ1_D05 | Up | 1.93514 | JA | |
| Gh_D06G0810 | GhJAZ1_D06 | Up | 1.09472 | JA | |
| Gh_D02G1776 | GhJAZ10_D02 | JASMONATE-ZIM-DOMAIN PROTEIN 10 | Up | 2.0817 | JA |
| Gh_D01G0196 | GhJAZ10_D01 | Up | 1.39144 | JA | |
| Gh_A03G1341 | GhJAZ10_A03 | Up | 2.58634 | JA | |
| Gh_A01G0153 | GhJAZ10_A01 | Up | 5.02041 | JA | |
| Gh_A05G1155 | GhJAZ6_A05 | JASMONATE-ZIM-DOMAIN PROTEIN 6 | Up | 1.10218 | JA |
| Gh_D10G0531 | GhJAZ6_D10 | Up | 1.29964 | JA | |
| Gh_A12G2172 | GhMYC4_A12 | A BHLH TRANSCRIPTIONAL REGULATOR INTERACTING WITH JAZ | Up | 2.22509 | JA |
| Gh_D02G0731 | GhCOI1_D02 | CORONATINE INSENSITIVE 1 | Up | 1.71994 | JA |
| Gh_D01G1903 | GhTGA10_D01 | TGACG SEQUENCE-SPECIFIC BINDING PROTEIN 10 | Up | 1.86541 | SA |
| Gh_A12G0274 | GhPR1_A12 | PATHOGENESIS-RELATED GENE 1 | Up | 5.6104 | SA |
| Gh_A10G0769 | GhBZIP_A10 | BASIC LEUCINE-ZIPPER | Up | 1.53952 | SA |
| Gh_A12G2380 | GhAHG1_A12 | ABA-HYPERSENSITIVE GERMINATION 1 | Up | 1.23584 | ABA |
| Gh_D10G2388 | GhPYL5_D10 | PYRABACTIN RESISTANCE 1-LIKE 5 | Up | 1.73882 | ABA |
| Gh_A10G2142 | GhPYR5_A10 | Up | 1.10077 | ABA | |
| Gh_D11G0290 | GhPYR1_D11 | PYRABACTIN RESISTANCE 1-LIKE 1 | Up | 1.26703 | ABA |
| Gh_A06G1418 | GhPYR6_A06 | PYRABACTIN RESISTANCE 1-LIKE 6 | Up | 2.40182 | ABA |
| Gh_A05G1922 | GhSRK2C_A05 | SNF1-RELATED PROTEIN KINASE 2C | Up | 1.12806 | ABA |
| Gh_D11G3472 | GhSRK2E_D11 | SNF1-RELATED PROTEIN KINASE 2E | Up | 1.53833 | ABA |
| Gh_A08G1649 | GhGID1_A08 | GA INSENSITIVE DWARF1 | Up | 1.44491 | GA |
| Gh_D11G1242 | GhGID1B_D11 | GA INSENSITIVE DWARF1B | Up | 1.19774 | GA |
| Gh_D08G1981 | GhGID1B_D08 | Up | 1.55219 | GA | |
| Gh_D13G0548 | GhBAK1_D13 | BRI1-ASSOCIATED RECEPTOR KINASE | Up | 2.87103 | BR |
| Gh_A01G0972 | GhBKI_A01 | BRI1 KINASE INHIBITOR 1 | Up | 1.94267 | BR |
| Gh_A10G0769 | GhBZIP_A10 | BASIC LEUCINE-ZIPPER | Up | 1.53952 | SA |
| Gh_D02G0430 | GhERF1_D02 | ETHYLENE RESPONSE FACTOR 1 | Up | 2.85319 | Ethylene |
| Gh_Sca115107G01 | GhERF1B | ETHYLENE RESPONSE FACTOR 1B | Up | 3.76382 | Ethylene |
| Gh_A01G0218 | GhARR2_A01 | RESPONSE REGULATOR 2 | Up | 1.2164 | cytokinin |