TABLE 1.
Potential κB sequences present in the PRV Kaplan genomea
| Sequence (5′–3′) | Strand | Positions | Location |
|---|---|---|---|
| GGGGCTCTCC | − | 698–707 | Noncoding region |
| GGGGCTCCCC | + | 7430–7439 | 290 bp upstream of UL51 ORF |
| GGGACTCCCC | − | 9468–9477 | 87 bp upstream of UL50 ORF |
| GGGGTTTCCC | + | 32711–32720 | Noncoding region |
| GGGGTTTCCC | − | 32711–32720 | Noncoding region |
| GGGGCTCCCC | + | 33949–33958 | Noncoding region |
| GGGGATCTCC | + | 36332–36341 | Noncoding region |
| GGGAGATCCC | − | 36333–36342 | Overlapping with the UL36 ORF |
| GGGGCTCCCC | − | 44025–44034 | Overlapping with the UL37 ORF |
| GGGACTCTCC | + | 46722–46731 | 41 bp upstream of the UL39 ORF |
| GGGGCTCCCC | − | 60095–60104 | 425 bp upstream of the UL24 ORF |
| GGGACTCTCC | + | 64238–64247 | Noncoding region |
| GGGAATCCCC | − | 64324–64333 | Noncoding region |
| GGGAATCCCC | + | 64324–64333 | Noncoding region |
| GGGGGTTTCC | + | 95406–95415 | Noncoding region |
| GGGAAACCCC | − | 95407–95416 | Overlapping with the UL1 ORF |
| GGGGGATTCC | + | 95788–95797 | Noncoding region |
| GGGGGATCCC | + | 96697–96706 | Noncoding region |
| GGGGCTCCCC | + | 97975–97984 | Noncoding region |
| GGGGGTCCCC | + | 100847–100856 | Noncoding region |
| GGGGCTCTCC | − | 104975–104984 | Overlapping with the IE180 ORF |
| GGGAGTCCCC | + | 106180–106187 | Noncoding region |
| GGGGGATTCC | + | 114358–114367 | Internal repeat sequence |
| GGGAATCCCC | − | 114359–114368 | Noncoding region |
| GGGGGATCCC | + | 115604–115613 | Internal repeat sequence, 577 bp upstream of the US1 ORF |
| GGGGGATCCC | − | 115606–115615 | Noncoding region |
| GGGGCTTCCC | + | 115776–115785 | Internal repeat sequence, 405 bp upstream of the US1 ORF |
| GGGGCTTTCC | + | 119313–119322 | Overlapping with the US3 ORF, 152 bp upstream of the US4 ORF |
| GGGGCTCCCC | − | 126209–126218 | Noncoding region |
| GGGGCTTCCC | − | 128954–128963 | 405 bp upstream of the US1 ORF |
| GGGGGATCCC | + | 129124–129333 | Terminal repeat sequence |
| GGGGGATCCC | − | 129126–129135 | 577 bp upstream of the US1 ORF |
| GGGAATCCCC | + | 130371–130380 | Terminal repeat sequence |
| GGGGGATTCC | − | 130372–130381 | Noncoding region |
| GGGAGTCCCC | − | 138550–138559 | Noncoding region |
| GGGGCTCTCC | + | 139755–139764 | Overlapping with the IE180 ORF |
a
Sequences are indicated from the 5′ to the 3′ end of the corresponding DNA strand. The nucleotide positions are defined based on the positive DNA strand from the 5′ to 3′ end of the PRV Kaplan genome.