Table 3.
Representative DEGs induced by IAA.
| Gene ID | gene name | Gene Description | Pathway Annotation | Log2 (FC) | Comparison group |
|---|---|---|---|---|---|
| Gh_A01G1294 | PSBY | photosystem II core complex proteins psbY, chloroplastic | photosynthesis | −1.21 | C0-5D-VS-IAA-C2-5D |
| Gh_A08G1679 | PSBW | photosystem II reaction center W protein, chloroplastic-like | photosynthesis | −1.11 | C0-5D-VS-IAA-C2-5D |
| Gh_D06G0548 | CYP734A1 | cytochrome P450 734A1-like | Brassinosteroid biosynthesis | −1.07 | C0-5D-VS-IAA-C2-5D |
| Gh_A07G2172 | RBCS | ribulose bisphosphate carboxylase small chain, chloroplastic isoform X1 | Carbon metabolism | −3.64 | C0-20D-VS-IAA-C2-20D |
| Gh_A05G1647 | DFR | dihydroflavonol-4-reductase-like | Flavonoid biosynthesis | −1.01 | C0-20D-VS-IAA-C2-20D |
| Gh_A01G1563 | CUT1 | 3-ketoacyl-CoA synthase 6 | Fatty acid elongation | 2.43 | C0-20D-VS-IAA-C2-20D |
| Gh_A09G1415 | PER21 | peroxidase 21 | Phenylpropanoid biosynthesis | −2.02 | C0-5D-VS-IAA-C1-5D |
| Gh_D08G0829 | PER73 | peroxidase 73 | Phenylpropanoid biosynthesis | −1.93 | C0-5D-VS-IAA-C1-5D |
| Gh_D12G1798 | CYP75B2 | Flavonoid 3′-monooxygenase | Flavonoid biosynthesis | −1.06 | C0-5D-VS-IAA-C1-5D |
| Gh_Sca006141G01 | accD | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic | Pyruvate metabolism | −1.77 | C0-5D-VS-IAA-C1-5D |
| Gh_A01G1681 | CYP98A2 | cytochrome P450 98A2-like | Flavonoid biosynthesis | −1.2 | C0-20D-VS-IAA-C1-20D |
| Gh_D11G1768 | SEND33 | ferredoxin–NADP reductase, leaf isozyme, chloroplastic | photosynthesis | −2.75 | C0-20D-VS-IAA-C1-20D |
| Gh_A01G1598 | PSBS | photosystem II 22 kDa protein, chloroplastic-like | photosynthesis | −2.64 | C0-20D-VS-IAA-C1-20D |
| Gh_D07G2129 | PSBW | photosystem II reaction center W protein, chloroplastic-like | photosynthesis | −2.81 | C0-20D-VS-IAA-C1-20D |
| Gh_A10G0948 | PPD | pyruvate, phosphate dikinase, chloroplastic | Carbon metabolism | −1.26 | IAA-C1-5D-VS-IAA-C2-5D |
| Gh_A10G2288 | PER27 | peroxidase 27-like | Phenylpropanoid biosynthesis | −2.2 | IAA-C1-5D-VS-IAA-C2-5D |
| Gh_D08G0829 | PER59 | peroxidase 59 | Phenylpropanoid biosynthesis | 2.18 | IAA-C1-20D-VS-IAA-C2-20D |
| Gh_A01G0158 | SERK1 | somatic embryogenesis receptor kinase 2-like isoform X1 | – | 1.34 | 24D-C3-0D-VS-C0-5D |
| Gh_A03G0840 | RAV1 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | – | −1.19 | 24D-C3-0D-VS-IAA-C2-20D |
| Gh_D11G3261 | WOX8 | WUSCHEL-related homeobox 8-like | – | 2.85 | 24D-C3-0D-VS-IAA-C1-5D |
| Gh_A11G0358 | ARF2 | auxin response factor 2 isoform X1 | – | 1.19 | 24D-C3-0D-VS-IAA-C1-5D |
| Gh_A01G0908 | ARF5 | auxin response factor 5 isoform X1 | – | 1.68 | 24D-C3-0D-VS-IAA-C1-5D |
| Gh_A12G0504 | LTP2 | non-specific lipid-transfer protein 2 | – | 1.34 | 24D-C3-0D-VS-IAA-C1-5D |
IAA, indole acetic acid; 24D, 2,4-dichlorophenoxyacetic acid; C0, 0 mg L−1; C1, 0.025 mg L−1; C2, 0.05 mg L−1; C3, 0.1 mg L−1; 5D, 5 days' treatment; 20D, 20 days' treatment.