TABLE 2.
Number of nucleotide changes in the 3′ UTR of SARS-CoV-2.
| Variant | Tested sample | Spike glycoprotein coding region nucleotide change | 3′ UTR nucleotide change | ||
|---|---|---|---|---|---|
| Change | Number of samples | Change | Number of samples | ||
| Alpha | 174,209 | 23403A→G | 174185 | 29764G→A | 4,161 |
| 24506T→G | 174168 | ||||
| 23709C→T | 174160 | ||||
| 23271C→A | 174152 | ||||
| 24914G→C | 174141 | ||||
| 23604C→A | 174116 | ||||
| 23063A→T | 173889 | ||||
| 25135G→T | 18281 | ||||
| 21855C→T | 3531 | ||||
| 21575C→T | 3410 | ||||
| 21614C→T | 2342 | ||||
| 21974G→C | 2160 | ||||
| Beta | 479 | 21801A→C | 479 | 29754C→T | 114 |
| 23403A→G | 479 | 29743C→T | 113 | ||
| 23664C→T | 479 | 29700A→G | 7 | ||
| 22206A→G | 478 | 29784C→T | 7 | ||
| 23063A→T | 476 | ||||
| 23012G→A | 475 | ||||
| 22813G→T | 472 | ||||
| 21614C→T | 107 | ||||
| 24415G→A | 80 | ||||
| 23198T→C | 45 | ||||
| 21641G→T | 29 | ||||
| 23764A→T | 29 | ||||
| 25088G→T | 21 | ||||
| 21574T→C | 9 | ||||
| 21618C→T | 7 | ||||
| 21636C→T | 7 | ||||
| 22119T→C | 6 | ||||
| 23029C→T | 6 | ||||
| 21974G→T | 5 | ||||
| 23248C→T | 5 | ||||
| 23470T→C | 5 | ||||
| 25378C→T | 5 | ||||
| Gamma | 6,229 | 23403A→G | 6226 | 29834T→A | 4,849 |
| 23063A→T | 6221 | 29858T→A | 248 | ||
| 22812A→C | 6220 | 29764G→T | 135 | ||
| 23012G→A | 6217 | 29715G→T | 63 | ||
| 23525C→T | 6214 | ||||
| 21638C→T | 6210 | ||||
| 21614C→T | 6202 | ||||
| 22132G→T | 6181 | ||||
| 25088G→T | 6181 | ||||
| 24642C→T | 6170 | ||||
| 21621C→A | 6146 | ||||
| 21974G→T | 6124 | ||||
| 22945C→T | 2409 | ||||
| 23625C→T | 706 | ||||
| 22841G→A | 243 | ||||
| 22456A→G | 224 | ||||
| 23611G→T | 211 | ||||
| 25159T→C | 160 | ||||
| 21597C→T | 135 | ||||
| 23005T→C | 133 | ||||
| 22211C→T | 108 | ||||
| 21724G→T | 69 | ||||
| Delta | 11,432 | 23403A→G | 11423 | 29742G→T | 11,346 |
| 21618C→G | 11416 | 29779G→T | 119 | ||
| 22917T→G | 11413 | 29700A→G | 121 | ||
| 22995C→A | 11412 | ||||
| 23604C→G | 11409 | ||||
| 24410G→A | 11408 | ||||
| 21987G→A | 10993 | ||||
| 21846C→T | 7025 | ||||
| 21792A→C | 3302 | ||||
| 24130C→T | 1088 | ||||
| 22936G→A | 887 | ||||
| 21575C→T | 211 | ||||
| 21595C→T | 172 | ||||
| 23741C→T | 139 | ||||
| 21806C→A | 130 | ||||
| 22227C→T | 129 | ||||
| 21811C→T | 124 | ||||
| 25062G→T | 115 | ||||
| Omicron | 191 | 22992G→A | 191 | ||
| 22995C→A | 191 | ||||
| 23202C→A | 191 | ||||
| 23403A→G | 191 | ||||
| 23525C→T | 191 | ||||
| 23599T→G | 191 | ||||
| 23604C→A | 191 | ||||
| 24424A→T | 191 | ||||
| 24469T→A | 191 | ||||
| 24503C→T | 191 | ||||
| 21762C→T | 190 | ||||
| 23013A→C | 190 | ||||
| 24130C→A | 190 | ||||
| 25000C→T | 190 | ||||
| 23948G→T | 189 | ||||
| 22578G→A | 188 | ||||
| 22679T→C | 187 | ||||
| 22686C→T | 187 | ||||
| 23854C→A | 186 | ||||
| 22673T→C | 185 | ||||
| 22674C→T | 185 | ||||
| 23040A→G | 182 | ||||
| 21846C→T | 181 | ||||
| 23048G→A | 180 | ||||
| 23063A→T | 177 | ||||
| 23055A→G | 176 | ||||
| 23075T→C | 176 | ||||
| 22898G→A | 174 | ||||
| 22882T→G | 172 | ||||
| 22813G→T | 120 | ||||
| 22599G→A | 37 | ||||
| 21595C→T | 18 | ||||
| 23664C→T | 16 | ||||
| 21766A→C | 3 | ||||
| 22917T→G | 3 | ||||
| 21995T→G | 2 | ||||
| 22006C→A | 2 | ||||
| 22120C→T | 2 | ||||