TABLE 2.
Major potential target genes for predicted miRNAs in cluster bean.
| miRNA | Targeted protein | Targeted EST ID | Description |
|---|---|---|---|
| miR156 | SPL4, SPL13, SBP2, SBP1, SPL5 | EG982824.1 GLL094_E10_036 | Squamosa promoter-binding-like protein |
| UBC | EG979243.1 GLL062_C07_030 | Ubiquitin-conjugating enzyme E2 | |
| miR172 | 2AAG | EG985097.1 GLE041_H10_033 | Serine/threonine-protein phosphatase |
| ARF | EG990107.1 GLE087_E01_004 | ADP-ribosylation factor | |
| miR393 | RK20 | EG987334.1 GLE062_E02_004 | 50S ribosomal protein |
| miR3979 | SPZX | EG989678.1 GLE083_C05_022 | Serpin-ZX |
| miR397 | G3PA | EG975619.1 GLL029_A09_040 | Glyceraldehyde-3-phosphate dehydrogenase A |
| miR414 | AGO1_ | EG985306.1 GLE044_A02_008 | Protein argonaute |
| ALFIN | EG986332.1 GLE052_H02_001 | PHD finger protein Alfin1, PHD finger protein ALFIN-LIKE 7 | |
| C3H2 | EG982280.1 GLL08_C06_022 | Zinc finger CCCH domain-containing | |
| CD48C | EG983335.1 GLE022_G09_034 | Cell division control protein 48 homolog C | |
| CESA6, CESA5, CESA2, CESA9, CESA9 | EG983155.1 GLE021_B02_007 | Cellulose synthase A catalytic subunit 5, Cellulose synthase A catalytic subunit 2, Probable cellulose synthase A catalytic subunit 9, Cellulose synthase A catalytic subunit 9 | |
| TGT2 | EG986117.1 GLE050_G11_042 | Trihelix transcription factor GT-2, Trihelix transcription factor GTL1, Trihelix transcription factor GTL2 | |
| miR437 | CCMC | EG985481.1 GLE045_F11_043 | Putative cytochrome c biosynthesis ccmC-like mitochondrial protein |
| miR773 | P2C | EG988418.1 GLE072_A02_008 | Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein |
| miR837 | HMDH1 | EG988124.1 GLE06_B01_007 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 |
| Q8OMT | EG976284.1 GLL034_E07_028 | 8-hydroxyquercetin 8-O-methyltransferase, Isoflavone-7-O-methyltransferase 9 | |
| miR838 | NAC | EG989253.1 GLE07_B05_023 | NAC domain-containing protein 18, NAC domain-containing protein 68, NAC domain-containing protein 67, NAC domain-containing protein 29, NAC domain-containing protein 48 |
| HMA4 | EG990669.1 GLE091_H04_009 | Putative cadmium/zinc-transporting ATPase | |
| miR865 | RL | EG988689.1 GLE074_F05_019 | 60S ribosomal protein |
| miR902 | MNS2 | EG989919.1 GLE085_F05_019 | Mannosyl-oligosaccharide 1, Mannosyl-oligosaccharide 1 |
| miR1109 | AGO4 | EG986669.1 GLE056_A10_040 | Protein argonaute |
| miR1132 | CML35 | EG985964.1 GLE04_C12_046 | Probable calcium-binding protein |
| RANA1 | EG985231.1 GLE043_C03_014 | GTP-binding nuclear protein Ran-A1 | |
| miR1134 | GAST1 | EG989127.1 GLE078_H10_033 | Gibberellin-regulated protein |
| miR1439 | CML | EG985964.1 GLE04_C12_046 | Probable calcium-binding protein |
| miR1527 | CAF | EG981106.1 GLL079_F10_035 | Probable CCR4-associated factor 1 homolog 7 |
| miR1533 | GALE | EG984760.1 GLE038_G01_002 | UDP-glucose 4-epimerase GEPI42, UDP-glucose 4-epimerase, UDP-glucose 4-epimerase 1, UDP-glucose 4-epimerase 2, UDP-glucose 4-epimerase GEPI48 |
| MT | EG983379.1 GLE011_B12_047 | Metallothionein like protein | |
| JKD_ MGP,NUC | EG990549.1 GLE090_G04_010 | Zinc finger protein JACKDAW, Zinc finger protein MAGPIE, Zinc finger protein NUTCRACKER | |
| miR1857 | GALE | GO542112.1 Mdfrjg3507I06.g1 Apple_E | UDP-glucose 4-epimerase GEPI48, UDP-glucose 4-epimerase 2, UDP-glucose 4-epimerase 3, UDP-glucose 4-epimerase GEPI42, UDP-glucose 4-epimerase 1 |
| miR2098 | RS193 | EG981936.1 GLL086_H09_033 | 40S ribosomal protein |
| miR2105 | REV, HOX9, HOX9, HOX10, HOX10 | EG990607.1 GLE091_C08_030 | Homeobox-leucine zipper protein |
| miR2275 | HSP81 82 83 90-1 | EG986829.1 GLE057_F03_011 | Heat shock protein 81-1, Heat shock protein 81-3, Heat shock protein 81-2, Heat shock protein 90-1 |
| miR2628 | DXS | EG980801.1 GLL076_E12_044 | Probable 1-deoxy-D-xylulose-5-phosphate synthase |
| miR2606 | TSJT1 | EG986569.1 GLE055_B02_007 | Stem-specific protein TSJT1 |
| miR2634 | AG | EG990361.1 GLE089_H09_033 | Floral homeotic protein AGAMOUS |
| GAOX2 | EG987827.1 GLE067_C01_006 | Gibberellin 20 oxidase 2, | |
| miR4995 | RLA | EG986778.1 GLE057_B04_015 | 60S acidic ribosomal protein |
| miR5021 | 2AAB_ | EG986207.1 GLE051_F09_035 | Serine/threonine-protein phosphatase 2A |
| 3MAT 5MAT1,AGCT | EG983947.1 GLE030_E09_036 | Malonyl-coenzyme A:anthocyanin 3-O-glucoside-6″-O-malonyltransferase | |
| AGL11, AGL5, AGL1_,MAD21 | EG975055.1 GLL011_C02_006 | Agamous-like MADS-box protein, MADS-box transcription factor 21 | |
| ARI7,ARI8,ARI6_ | EG987656.1 GLE065_E09_036 | Probable E3 ubiquitin-protein ligase | |
| ASP | EG984370.1 GLE035_A02_008 | Aspartic proteinase Asp1 | |
| BGLS | EG983200.1 GLE021_E07_028 | Non-cyanogenic beta-glucosidase,Cyanogenic beta-glucosidase | |
| miR5079 | EXP13 | EG985350.1 GLE044_D07_029 | Expansin-A13 |
| miR5565 | ADLO1 | EG986858.1 GLE057_H05_017 | Protein ARABIDILLO 1 |
| miR5641 | CAX3 | EG984929.1 GLE040_C12_046 | Vacuolar cation/proton exchanger |
| miR5658 | AGL11 | EG975055.1 GLL011_C02_006 | Agamous-like MADS-box protein AGL11 |
| CSLG2 | EG976517.1 GLL036_G04_010 | Cellulose synthase-like protein G2, Cellulose synthase-like protein G1, Cellulose synthase-like protein G3 | |
| GASA4 | EG987384.1 GLE062_H11_041 | Gibberellin-regulated protein 4 | |
| GLYT3 | EG975650.1 GLL029_D02_005 | Probable glycosyltransferase | |
| HSFA9, HSF30, HFA2C,HFA6B | EG985970.1 GLE04_D05_021 | Heat stress transcription factor A-9, Heat stress transcription factor A-2e, Heat shock factor protein HSF30, Heat stress transcription factor A-2c, Heat stress transcription factor A-6b | |
| miR168 | AGO1 | EG985306.1 GLE044_A02_008 | Protein argonaute 1 |
| DHSA | EG985277.1 GLE013_C07_030 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit | |
| miR169 | AL2B7 | EG983762.1 GLE029_F12_043 | Aldehyde dehydrogenase family 2 member B7 |
| miR399 | CYSK | EG985107.1 GLE042_A07_032 | Cysteine synthase |
| miR2082 | TBB | EG984572.1 GLE036_H07_025 | Tubulin beta-6 chain, Tubulin beta-3 chain, Tubulin beta-7 chain, Tubulin beta-4 chain |
| miR5662 | PIP | EG976742.1 GLL013_A03_016 | Probable aquaporin PIP1-2, AquaporinPIP1-2, Aquaporin PIP1-3/PIP1-4, Aquaporin PIP1-3, Aquaporin PIP1-1 |
| miR1535 | C3H11,C3H21 | EG979135.1 GLL061_C02_006 | Zinc finger CCCH domain-containing protein 11, Zinc finger CCCH domain-containing protein 21 |