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. 2022 Mar 15;8(3):e09087. doi: 10.1016/j.heliyon.2022.e09087

Table 1.

Details on molecular dynamics calculations [33].

Simulation cell parameters Convergence criteria Dynamics parameters Calculation code
Lattice:
3D triclinic
Algorithm Smart Ensemble NVT Force field
Cell size:
a = 32.27 Å
b = 32.27 Å
c = 30.13 Å
Quality convergence: tolerance ultra-fine Time step: 1 fs
Simulation time: 400 ps
Steps number: 5000
Compass
Iron atoms number:
1176
Energy convergence: 5 × 10−5 kcal/mol Cutoff distance: 15.5 Å
Thermostat Indersen
Spline width: 1 Å
Buffer width 0.5 Å
Pre-optimization of iron surface by GGA in the Dmol̂3 module with DNP+