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. Author manuscript; available in PMC: 2022 Jul 14.
Published in final edited form as: Virology. 2018 May 7;520:1–10. doi: 10.1016/j.virol.2018.04.017

Table 1.

Sequences of the oligonucleotides and composition of the different protocols. i = inosine; W = A or T; D = A or G or T; K = T or G; Y = C or T; M = A or C; R = A or G; V = A or C or G; H = A or C or T.

Primer mix Primer sequence (5–3’)
Beta-3-1
B3L1FW3 AGGACATCCATACTTTGAGGTTCGAG
B3L1FW4 TAGGACATCCATATTTTGATGTGAGAG
B3L1FW5 GATGTTAGAGACACTGGAGATTCAACA
B3L1FW6 GATGTTAGAGACACTGGGGATTCAACA
B3L1FW7 GATGTTAGAGACACTGTGGATCAAACA
B3L1RW ATAATAGTATTTCTTAATTCTAATGGAGG
B3L1RW4 ATAACTGAATTGATTAATTCTAATGGAGG
B3L1RW5 ATAACTGTATTTACTAATTCTAAAGGTGG
B3L1RW6 TACAGTATTTACCAGTTCCAAAGGTGG
B3L1RW7 ATTACAGTATTAACTAATTCTAAAGGTGG
B3L1RW8 ATTACAGTATTTACTAATTCTAAAGGTGG
Beta-3-2
B3L1FW1 GTAGGACATCCATAYTTTGAKGTKiGAG
B3L1FW2 TTGATGTTAGAGACACTGiDGATYMAACA
B3L1RW1 ATAAiWGWATTKYTTAATTCTAATGGAGG
B3L1RW2 ATTACAGTATTiACKARTTCYAAAGGTGG
CUT
CUT1Fw TRCCiGAYCCiAATAARTTTG
CUT1AFw TRCCiGAYCCiAACAGRTTTG
CUT1BFw TRCCiGAYCCiAATAGRTTTG
CUT1CFw TRCCiGAYCCiAACAARTTTG
CUT1BRv ARGAYGGiGAYATGGTiGA
FAP
FAP59 TAACWGTiGGiCAYCCWTATT
FAP64 CCWATATCWVHCATiTCiCCATC
FAPM1
FAP59.1 TAACAGTDGGiCAYCCWTWTT
FAP59.2 TAACAGTDGGiCAYCCWTAYT
FAP64.1 CCDATATCWVHCATATCiCCATC
FAP59 TAACWGTiGGiCAYCCWTATT
FAP64 CCWATATCWVHCATiTCiCCATC
FAPM2
FAP59.2 TAACAGTDGGiCAYCCWTAYT
FAP64.1 CCDATATCWVHCATATCiCCATC