Table 4.

Summary of RNA-seq results.

Sample	Raw reads	Clean reads	Q30 (%)	GC content (%)	Total mapped	Multiple mapped	Uniquely mapped
CK-5d-1	46.03M	45.11M	93.70	43.39	44,104,797 (97.77%)	1,944,288 (4.31%)	42,160,509 (93.46%)
CK-5d-2	44.66M	43.84M	94.53	42.54	42,569,240 (97.09%)	1,979,914 (4.52%)	40,589,326 (92.58%)
CK-5d-3	47.70M	46.82M	94.64	42.88	45,654,339 (97.50%)	2,196,016 (4.69%)	43,458,323 (92.81%)
SD-5d-1	45.07M	44.28M	94.57	43.03	43,067,558 (97.27%)	1,975,957 (4.46%)	41,091,601 (92.81%)
SD-5d-2	49.65M	48.65M	93.86	43.98	47,584,894 (97.82%)	2,227,964 (4.58%)	45,356,930 (93.24%)
SD-5d-3	42.68M	41.93M	94.39	42.72	40,719,836 (97.11%)	1,845,739 (4.40%)	38,874,097 (92.71%)
CK-10d-1	50.31M	49.31M	94.03	44.33	48,196,864 (97.75%)	2,325,921 (4.72%)	45,870,943 (93.03%)
CK-10d-2	47.65M	46.71M	94.10	44.75	45,724,496 (97.89%)	2,676,489 (5.73%)	43,048,007 (92.16%)
CK-10d-3	47.91M	47.04M	94.16	44.53	46,153,328 (98.11%)	2,590,091 (5.51%)	43,563,237 (92.61%)
SD-10d-1	43.72M	42.89M	94.04	44.79	42,115,641 (98.19%)	2,619,838 (6.11%)	39,495,803 (92.08%)
SD-10d-2	43.37M	42.54M	93.99	44.43	41,766,075 (98.17%)	2,390,006 (5.62%)	39,376,069 (92.56%)
SD-10d-3	50.18M	49.28M	94.24	44.79	48,403,476 (98.22%)	2,844,589 (5.77%)	45,558,887 (92.45%)
CK-15d-1	50.07M	49.09M	94.00	44.58	48,197,147 (98.18%)	2,475,315 (5.04%)	45,721,832 (93.14%)
CK-15d-2	46.03M	45.21M	94.17	44.29	44,392,867 (98.18%)	2,242,198 (4.96%)	42,150,669 (93.22%)
CK-15d-3	47.81M	46.85M	93.97	44.37	45,866,501 (97.90%)	2,196,580 (4.69%)	43,669,921 (93.21%)
SD-15d-1	49.13M	48.36M	94.42	44.99	47,471,908 (98.16%)	3,039,632 (6.29%)	44,432,276 (91.88%)
SD-15d-2	47.47M	46.69M	94.45	44.62	45,812,022 (98.13%)	2,686,977 (5.76%)	43,125,045 (92.37%)
SD-15d-3	48.25M	47.36M	94.13	44.76	46,500,053 (98.19%)	2,949,831 (6.23%)	43,550,222 (91.96%)