Table 4.
Information on recombination events of QYYZ-like PRRSV isolates detected by RDP4 software.
| Strains | Breakpoints | Parental sequence | Detection methods (p-value) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Beginning | Ending | Minor | Major | RDP | GENECONV | BootScan | MaxChi | Chimera | SiScan | 3Seq | |
| GXXNF10-1803 | 1 | 3,507 | JXA1 | QYYZ | 2.448 × 10−36 | - | 1.505 × 10−27 | 1.677 × 10−28 | 1.081 × 10−23 | 9.166 × 10−82 | 4.440 × 10−16 |
| 7,781 | 12,294 | JXA1 | QYYZ | 2.352 × 10−20 | 4.191 × 10−10 | 1.829 × 10−19 | 8.522 × 10−11 | 6.504 × 10−5 | - | 4.440 × 10−16 | |
| HNLCL15-1903 | 1 | 1,659 | SH/CH/2016 | NADC30 | 5.474 × 10−47 | 1.583 × 10−16 | 6.869 × 10−38 | 1.302 × 10−37 | 1.196 × 10−17 | - | 1.110 × 10−16 |
| 10,531 | 14,132 | SH/CH/2016 | NADC30 | 4.798 × 10−13 | 4.699 × 10−8 | 3.515 × 10−13 | 2.702 × 10−10 | 9.689 × 10−3 | - | 1.221 × 10−15 | |
| GXXNF53-1805 | 12,685 | 15,314 | QYYZ | JXA1 | 4.068 × 10−37 | - | 4.114 × 10−34 | 1.467 × 10−13 | 3.866 × 10−12 | - | 3.330 × 10−15 |
| GDXNF60-1805 | 12,541 | 15,316 | QYYZ | JXA1 | 1.153 × 10−26 | 1.115 × 10−14 | 5.567 × 10−26 | 9.478 × 10−09 | 1.709 × 10−09 | - | 4.440 × 10−16 |
| GXXNF74-1806 | 1 | 2,339 | JXA1 | QYYZ | 3.589 × 10−85 | 5.042 × 10−53 | 2.133 × 10−82 | 1.171 × 10−31 | 7.599 × 10−35 | - | 4.440 × 10−16 |
| 6,924 | 8,969 | JXA1 | QYYZ | 1.197 × 10−73 | 7.929 × 10−30 | 3.125 × 10−73 | 3.349 × 10−23 | 3.736 × 10−25 | - | 1.110 × 10−16 | |
| GXXNF78-1806 | 11,987 | 12,851 | QYYZ | JXA1 | 2.804 × 10−68 | 1.001 × 10−35 | 1.478 × 10−67 | 2.161 × 10−19 | 1.175 × 10−21 | - | 4.440 × 10−16 |
| 13,673 | 15,266 | QYYZ | JXA1 | 4.474 × 10−83 | 6.225 × 10−53 | 1.542 × 10−80 | 1.379 × 10−28 | 6.139 × 10−30 | - | 1.099 × 10−14 | |
| GDXNF229-1811 | 1 | 2,285 | JXA1 | QYYZ | 5.898 × 10−65 | 1.549 × 10−52 | 3.919 × 10−70 | 8.204 × 10−25 | 7.417 × 10−21 | - | 3.330 × 10−16 |
| 6,317 | 8,812 | JXA1 | QYYZ | 6.152 × 10−86 | 2.128 × 10−72 | 1.950 × 10−86 | 8.256 × 10−27 | 2.368 × 10−21 | - | 3.330 × 10−16 | |
| HNTZJ1714-2011 | 488 | 3,548 | NADC30 | JXA1 | 8.808 × 10−125 | 2.849 × 10−88 | 7.364 × 10−54 | 2.100 × 10−50 | 8.792 × 10−58 | 1.554 × 10−50 | 4.440 × 10−15 |
| 11,668 | 15,011 | QYYZ | JXA1 | 1.119 × 10−3 | 4.470 × 10−19 | 1.405 × 10−12 | 4.438 × 10−8 | 9.950 × 10−6 | 8.177 × 10−40 | - | |
| GXTZJ2325-2112 | 1 | 2,004 | JXA1 | QYYZ | 1.870 × 10−12 | - | 1.777 × 10−13 | 1.089 × 10−9 | 1.218 × 10−14 | 2.968 × 10−11 | |
| 2,004 | 5,268 | NADC30 | QYYZ | 2.595 × 10−95 | 1.055 × 10−67 | 3.404 × 10−92 | 7.725 × 10−30 | 8.322 × 10−38 | 1.696 × 10−51 | 1.332 × 10−15 | |