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. 2022 Jun 14;18(7):4490–4502. doi: 10.1021/acs.jctc.2c00200

Table 2. Performance of MD Simulations Including gHBfix Termsa.

system software no gHBfix gHBfix19 gHBfixopt
CAAU (REST2) AMBER18 712 ns/day 682 ns/day 682 ns/day
gcUUCGgc (ST-MetaD) GROMACS + PLUMED 358 ns/day 355 ns/day 325 ns/day
a

AMBER18 simulations were performed using a single core of an Intel(R) Xeon(R) E5-2620 2.10 GHz processor and a NVidia GeForce RTX 2080 Ti card per replica. GROMACS + PLUMED simulations were performed using 8 cores of an Intel(R) Xeon(R) Gold 6130 2.10 GHz processor and a NVidia GeForce GTX1080ti card per replica.