TABLE 3.
TRF peak matches to organisms from the RDP database
| TRF peak seta and organism | TRF matching length for:
|
||
|---|---|---|---|
| MspI | DpnII | HaeIII | |
| TRF peaks in the L. acidophilus set | 141 | 156 | 207 |
| Lactobacillus acidophilus NCFM | 144 | 158 | 209 |
| Lactobacillus crispatus | 143 | 157 | 208 |
| Lactobacillus amylovorus | 141 | 155 | 206 |
| TRF peaks in the L. johnsonii set | 149 | 287 | 293 |
| Lactobacillus acidophilus ssp. johnsonii | 151 | 288 | 294 |
| Lactobacillus gasseri | 151 | 288 | 294 |
| Lactobacillus johnsonii | 151 | 288 | 294 |
| TRF peaks in the R. flavefaciens set | 243 | 233 | 264 |
| Ruminococcus flavefaciens (5 strains) | 244 | 234 | 264 |
| Unidentified rumen bacterium (3 clones) | 244 | 234 | 264 |
| Ruminococcus flavefaciens (1 strain) | 246 | 236 | 266 |
| Unidentified rumen bacterium (1 clone) | 246 | 236 | 266 |
a
TRF peak sets (data in boldface type) were seen in TRF patterns (Fig. 3), while TRF lengths ascribed to organisms were predicted from 16S rDNA sequences in the RDP database.