Table 2.
Docking results of manually optimised lead compounds
| Compound name | Docking score (kcal/mol) | Glide g score (kcal/mol) | MM-GBSA binding score (kcal/mol) | Interaction residues | Nature of interactions | Interaction distance (Å) | No. of synthetic pathways (pathfinder) |
|---|---|---|---|---|---|---|---|
| Fenbufen | −11.764 | −11.819 | −20.64 | Fe2+ | Metal co-ordination | 2.31 | 8 |
| His-313 | Pi-Pi stacking | 5.34 | |||||
| Tyr-303 | H-bond | 2.56 | |||||
| Tyr-329 | H-bond | 1.66 | |||||
| Arg-383 | H-bond | 1.70 | |||||
| Salt bridge | 2.78 | ||||||
| Compound A | −14.268 | −14.607 | −16.83 | Fe2+ | Metal co-ordination | 2.01 | 3 |
| Tyr-329 | H-bond | 2.83 | |||||
| Tyr-303 | H-bond | 1.82 | |||||
| Arg-383 | H-bond | 2.02 | |||||
| Salt bridge | 2.31 | ||||||
| Compound B | −13.611 | −13.611 | −29.90 | Fe2+ | Metal co-ordination | 2.17 | 2 |
| Arg-383 | H-bond | 2.21 | |||||
| Tyr-303 | Salt bridge | 1.90 | |||||
| Tyr-329 | H-bond | 2.49 | |||||
| His-313 | H-bond | 1.65 | |||||
| Asp-254 | Pi-Pi stacking | 3.45 | |||||
| Water bridge | 1.75 | ||||||
| Compound C | −11.908 | −12.691 | −36.38 | Fe2+ | Metal co-ordination | 2.26 | 3 |
| Tyr-303 | H-bond | 3.27 | |||||
| Tyr-329 | H-bond | 2.64 | |||||
| Arg-383 | H-bond | 2.87 | |||||
| Tyr-310 | Salt bridge | 2.75 | |||||
| Pi-Pi stacking | 4.87 | ||||||
| Compound D | −15.664 | −16.205 | −13.67 | Fe2+ | Metal co-ordination | 2.19 | 8 |
| Tyr-329 | H-bond | 1.90 | |||||
| Tyr-303 | H-bond | 2.62 | |||||
| Arg-383 | H-bond | 1.89 | |||||
| Salt bridge | 1.01 |