Table 3:
Comparison of DFTB2+ML KIE values computed from path integral simulations to those computed from Bigeleisen’s equation. The columns N, σ, “Min.”, and “Max.” are the number of KIE values, the standard deviation of the KIE distribution, and minimum and maximum KIE values, respectively.
System | Atom | TD-FEP | Bigeleisen |
||||
---|---|---|---|---|---|---|---|
KIE | KIE | N | σ | Min. | Max. | ||
| |||||||
Native | O2′ | 0.989 ± 0.001 | 0.991 ± 0.001 | 26 | 0.005 | 0.980 | 0.998 |
O5′ | 1.024 ± 0.000 | 1.038 ± 0.002 | 26 | 0.008 | 1.023 | 1.051 | |
OP1 | 1.003 ± 0.000 | 1.004 ± 0.001 | 26 | 0.003 | 1.000 | 1.016 | |
OP2 | 1.002 ± 0.001 | 1.003 ± 0.000 | 26 | 0.002 | 0.999 | 1.007 | |
S12 | O2′ | 0.993 ± 0.001 | 0.996 ± 0.001 | 19 | 0.005 | 0.989 | 1.010 |
O5′ | 1.013 ± 0.000 | 1.024 ± 0.002 | 19 | 0.009 | 1.004 | 1.035 | |
SP1 | 1.000 ± 0.000 | 1.001 ± 0.000 | 19 | 0.001 | 1.000 | 1.003 | |
SP2 | 1.000 ± 0.000 | 1.001 ± 0.000 | 19 | 0.001 | 0.998 | 1.003 | |
S1P | O2′ | 0.990 ± 0.000 | 0.993 ± 0.001 | 62 | 0.005 | 0.983 | 1.005 |
O5′ | 1.018 ± 0.000 | 1.032 ± 0.001 | 62 | 0.009 | 1.010 | 1.051 | |
SP1 | 1.000 ± 0.000 | 1.002 ± 0.000 | 62 | 0.002 | 0.994 | 1.007 | |
OP2 | 1.003 ± 0.000 | 1.003 ± 0.000 | 62 | 0.003 | 0.996 | 1.012 | |
S2′ | S2′ | 0.997 ± 0.000 | 1.001 ± 0.001 | 30 | 0.007 | 0.996 | 1.028 |
O5′ | 1.021 ± 0.000 | 1.032 ± 0.002 | 30 | 0.014 | 0.993 | 1.054 | |
OP1 | 1.003 ± 0.000 | 1.008 ± 0.001 | 30 | 0.007 | 0.992 | 1.032 | |
OP2 | 1.002 ± 0.001 | 1.008 ± 0.002 | 30 | 0.010 | 0.995 | 1.051 | |
S3′ | O2′ | 0.988 ± 0.001 | 0.994 ± 0.001 | 19 | 0.005 | 0.986 | 1.005 |
O5′ | 1.021 ± 0.001 | 1.037 ± 0.002 | 19 | 0.010 | 1.016 | 1.050 | |
OP1 | 1.002 ± 0.001 | 1.003 ± 0.001 | 19 | 0.004 | 0.997 | 1.010 | |
OP2 | 0.998 ± 0.000 | 1.001 ± 0.001 | 19 | 0.004 | 0.994 | 1.013 | |
S5′ | O2′ | 1.008 ± 0.001 | 1.026 ± 0.001 | 111 | 0.012 | 0.988 | 1.051 |
S5′ | 1.000 ± 0.000 | 1.003 ± 0.000 | 111 | 0.002 | 0.998 | 1.024 | |
OP1 | 1.002 ± 0.001 | 1.004 ± 0.000 | 111 | 0.004 | 0.995 | 1.015 | |
OP2 | 1.002 ± 0.000 | 1.002 ± 0.000 | 111 | 0.003 | 0.993 | 1.009 |