Table 2.
Comparison of the coverage of the transcriptome generated in this study and the reference transcriptome.
| Data | Nb. of transcripts | Nb. of genes | Lenght (bp) | Max (kbp) | N50 | GC% | Mean cov. |
|---|---|---|---|---|---|---|---|
| Transcriptome Acanthamoeba castellanii strain Neff (This study) | 166,782 | 55,723 | 388,816,638 | 45,204 | 4260 | 60.61 | 271X |
| Transcriptome Acanthamoeba castellanii strain Neff (Clarke et al.5) | 14,981 | 15,655 | 19,742,193 | 13,440 | 1722 | 62.94 |
Some metrics were calculated from the reference genome using Assemblathon v2 (https://github.com/KorfLab/Assemblathon/).