TABLE 2.

Similarity of predicted proteins and regions of DNA on cosmid cHRIM1 to sequences on the SWISSPROT and EMBL databases as determined by using the program FASTA (6.0)^a

Homology and X. nematophilus gene or region	Start of comparison (X. nematophilus gene)	Homologous protein or gene	EMBL accession no.	Start of comparison (target protein or gene)	Region length (amino acids)	% Identity
Protein homology
xptA1	23	TcbA	085160	23	2,545	44.9
	10	TcdA	Q9RN45	1	2,576	44.5
	1,775	TcaB	085152	442	1,213	38.9
	945	TccB	085156	30	1,645	28.5
	40	TccA	085151	40	141	29.7
xptA2	23	TcbA	085160	23	2,554	40.6
	1	TcdA	Q9RN45	25	2,560	43.2
	1,786	TcaB	085152	440	768	35.5
	965	TccB	085156	40	1,635	26.4
	100	TccA	085151	116	71	46.4
xptB1	5	TccC	085157	8	902	48.2
xptC1	1	TcaC	085153	1	1,435	48.8
xptD1	730	TccB	085156	260	847	38.9
	317	TcbA	085160	1,752	795	32.8
	207	TcaB	085152	350	899	31.3
chi	98	Exochitinase	052863	1	553	37.7
IS	1	IS630	X05955	1	343	58.1
Ptrans	10	Transposase	AAC82732	25	273	47.3
Phage	1	P4-helicase	P10277	626	152	47.3
DNA homology
mit1		Mitochondrial	A1034559			60.0
		DNA (AT rich)	D86630			55.1
			Aq026159			60.3
		Retrovirus	Q03276			30.7
		R1	J01459			60.0
		15S rRNA	X03240			57.0
mit2		AT rich	X54011			55.0
		tRNA	Y13767			65.0
		AT rich	J01459			65.1

^aThe starting point and length over which the protein comparisons were made between X. nematophilus and homologous target proteins (P. luminescens toxins or other proteins). The positions of these genes and the regions of DNA on cHRIM1 are outlined in Fig. 1, and the details are listed in the EMBL submission.